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Sanna, M., Bellocchi, G., Fumagalli, M., & Acutis, M. (2015). A new method for analysing the interrelationship between performance indicators with an application to agrometeorological models. Env. Model. Softw., 73, 286–304.
Abstract: The use of a variety of metrics is advocated to assess model performance but correlated metrics may convey the same information, thus leading to redundancy. Starting from this assumption, a method was developed for selecting, from among a collection of performance indicators, one or more subsets providing the same information as the entire set. The method, based on the definition of “stable correlation”, was applied to 23 performance indicators of agrometeorological models, calculated on large sets of simulated and observed data of four agronomic and meteorological variables: above-ground biomass, leaf area index, hourly air relative humidity and daily solar radiation. Two subsets were determined: {Squared Bias, Root Mean Squared Relative Error, Coefficient of Determination, Pattern Index, Modified Modelling Efficiency}, {Persistence Model Efficiency, Root Mean Squared Relative Error, Coefficient of Determination, Pattern Index}. The method needs corroboration but is statistically founded and can support the implementation of standardized evaluation tools. (C) 2015 Elsevier Ltd. All rights reserved.
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Ma, S., Lardy, R., Graux, A. - I., Ben Touhami, H., Klumpp, K., Martin, R., et al. (2015). Regional-scale analysis of carbon and water cycles on managed grassland systems. Env. Model. Softw., 72, 356–371.
Abstract: Predicting regional and global carbon (C) and water dynamics on grasslands has become of major interest, as grasslands are one of the most widespread vegetation types worldwide, providing a number of ecosystem services (such as forage production and C storage). The present study is a contribution to a regional-scale analysis of the C and water cycles on managed grasslands. The mechanistic biogeochemical model PaSim (Pasture Simulation model) was evaluated at 12 grassland sites in Europe. A new parameterization was obtained on a common set of eco-physiological parameters, which represented an improvement of previous parameterization schemes (essentially obtained via calibration at specific sites). We found that C and water fluxes estimated with the parameter set are in good agreement with observations. The model with the new parameters estimated that European grassland are a sink of C with 213 g C m(-2) yr(-1), which is close to the observed net ecosystem exchange (NEE) flux of the studied sites (185 g C m(-2) yr(-1) on average). The estimated yearly average gross primary productivity (GPP) and ecosystem respiration (RECO) for all of the study sites are 1220 and 1006 g C m(-2) yr(-1), respectively, in agreement with observed average GPP (1230 g C m(-2) yr(-1)) and RECO (1046 g C m(-2) yr(-1)). For both variables aggregated on a weekly basis, the root mean square error (RMSE) was similar to 5-16 g C week(-1) across the study sites, while the goodness of fit (R-2) was similar to 0.4-0.9. For evapotranspiration (ET), the average value of simulated ET (415 mmyr(-1)) for all sites and years is close to the average value of the observed ET (451 mm yr(-1)) by flux towers (on a weekly basis, RMSE similar to 2-8 mm week(-1); R-2 = 0.3-0.9). However, further model development is needed to better represent soil water dynamics under dry conditions and soil temperature in winter. A quantification of the uncertainties introduced by spatially generalized parameter values in C and water exchange estimates is also necessary. In addition, some uncertainties in the input management data call for the need to improve the quality of the observational system.
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De Swaef, T., Bellocchi, G., Aper, J., Lootens, P., & Roldan-Ruiz, I. (2019). Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality. J. Experim. Bot., 70(9), 2587–2604.
Abstract: Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized.
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Persson, T., Kværnø, S., & Höglind, M. (2015). Impact of soil type extrapolation on timothy grass yield under baseline and future climate conditions in southeastern Norway. Clim. Res., 65, 71–86.
Abstract: Interactions between soil properties and climate affect forage grass productivity. Dynamic models, simulating crop performance as a function of environmental conditions, are valid for a specific location with given soil and weather conditions. Extrapolations of local soil properties to larger regions can help assess the requirement for soil input in regional yield estimations. Using the LINGRA model, we simulated the regional yield level and variability of timothy, a forage grass, in Akershus and Ostfold counties, Norway. Soils were grouped according to physical similarities according to 4 sets of criteria. This resulted in 66, 15, 5 and 1 groups of soils. The properties of the soil with the largest area was extrapolated to the other soils within each group and input to the simulations. All analyses were conducted for 100 yr of generated weather representing the period 1961-1990, and climate projections for the period 2046-2065, the Intergovernmental Panel on Climate Change greenhouse gas emission scenario A1B, and 4 global climate models. The simulated regional seasonal timothy yields were 5-13% lower on average and had higher inter-annual variability for the least detailed soil extrapolation than for the other soil extrapolations, across climates. There were up to 20% spatial intra-regional differences in simulated yield between soil extrapolations. The results indicate that, for conditions similar to these studied here, a few representative profiles are sufficient for simulations of average regional seasonal timothy yield. More spatially detailed yield analyses would benefit from more detailed soil input.
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Coucheney, E., Buis, S., Launay, M., Constantin, J., Mary, B., García de Cortázar-Atauri, I., et al. (2015). Accuracy, robustness and behavior of the STICS soil–crop model for plant, water and nitrogen outputs: Evaluation over a wide range of agro-environmental conditions in France. Env. Model. Softw., 64, 177–190.
Abstract: Soil-crop models are increasingly used as predictive tools to assess yield and environmental impacts of agriculture in a growing diversity of contexts. They are however seldom evaluated at a given time over a wide domain of use. We tested here the performances of the STICS model (v8.2.2) with its standard set of parameters over a dataset covering 15 crops and a wide range of agropedoclimatic conditions in France. Model results showed a good overall accuracy, with little bias. Relative RMSE was larger for soil nitrate (49%) than for plant biomass (35%) and nitrogen (33%) and smallest for soil water (10%). Trends induced by contrasted environmental conditions and management practices were well reproduced. Finally, limited dependency of model errors on crops or environments indicated a satisfactory robustness. Such performances make STICS a valuable tool for studying the effects of changes in agro-ecosystems over the domain explored. (C) 2014 Elsevier Ltd. All rights reserved.
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