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De Swaef, T., Bellocchi, G., Aper, J., Lootens, P., & Roldan-Ruiz, I. (2019). Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality. J. Experim. Bot., 70(9), 2587–2604.
Abstract: Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized.
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Kipling, R. P., Topp, C. F. E., Bannink, A., Bartley, D. J., Blanco-Penedo, I., Cortignani, R., et al. (2019). To what extent is climate change adaptation a novel challenge for agricultural modellers. Env. Model. Softw., 120, Unsp 104492.
Abstract: Modelling is key to adapting agriculture to climate change (CC), facilitating evaluation of the impacts and efficacy of adaptation measures, and the design of optimal strategies. Although there are many challenges to modelling agricultural CC adaptation, it is unclear whether these are novel or, whether adaptation merely adds new motivations to old challenges. Here, qualitative analysis of modellers’ views revealed three categories of challenge: Content, Use, and Capacity. Triangulation of findings with reviews of agricultural modelling and Climate Change Risk Assessment was then used to highlight challenges specific to modelling adaptation. These were refined through literature review, focussing attention on how the progressive nature of CC affects the role and impact of modelling. Specific challenges identified were: Scope of adaptations modelled, Information on future adaptation, Collaboration to tackle novel challenges, Optimisation under progressive change with thresholds, and Responsibility given the sensitivity of future outcomes to initial choices under progressive change.
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Francioni, M., D’Ottavio, P., Lai, R., Trozzo, L., Budimir, K., Foresi, L., et al. (2019). Seasonal Soil Respiration Dynamics and Carbon-Stock Variations in Mountain Permanent Grasslands Compared to Arable Lands. Agriculture-Basel, 9(8), 165.
Abstract: Permanent grasslands provide a wide array of ecosystem services. Despite this, few studies have investigated grassland carbon (C) dynamics, and especially those related to the effects of land-use changes. This study aimed to determine whether the land-use change from permanent grassland to arable lands resulted in variations in the soil C stock, and whether such variations were due to increased soil respiration or to management practices. To address this, seasonal variations of soil respiration, sensitivity of soil respiration to soil temperature (Q(10)), and soil C stock variations generated by land-use changes were analyzed in a temperate mountain area of central Italy. The comparisons were performed for a permanent grassland and two adjacent fields, one cultivated with lentil and the other with emmer, during the 2015 crop year. Soil respiration and its heterotrophic component showed different spatial and temporal dynamics. Annual cumulative soil respiration rates were 6.05, 5.05 and 3.99 t C ha(-1) year(-1) for grassland, lentil and emmer, respectively. Both soil respiration and heterotrophic soil respiration were positively correlated with soil temperature at 10 cm depth. Derived Q(10) values were from 2.23 to 6.05 for soil respiration, and from 1.82 to 4.06 for heterotrophic respiration. Soil C stock at over 0.2 m in depth was 93.56, 48.74 and 46.80 t C ha(-1) for grassland, lentil and emmer, respectively. The land-use changes from permanent grassland to arable land lead to depletion in terms of the soil C stock due to water soil erosion. A more general evaluation appears necessary to determine the multiple effects of this land-use change at the landscape scale.
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Cassardo, C., & Andreoli, V. (2019). On the Representativeness of UTOPIA Land Surface Model for Creating a Database of Surface Layer, Vegetation and Soil Variables in Piedmont Vineyards, Italy. Applied Sciences-Basel, 9(18), 3880.
Abstract: The main aim of the paper is to show how, and how many, simulations carried out using the Land Surface Model UTOPIA (University of TOrino model of land Process Interaction with Atmosphere) are representative of the micro-meteorological conditions and exchange processes at the atmosphere/biosphere interface, with a particular focus on heat and hydrologic transfers, over an area of the Piemonte (Piedmont) region, NW Italy, which is characterized by the presence of many vineyards. Another equally important aim is to understand how much the quality of the simulation outputs was influenced by the input data, whose measurements are often unavailable for long periods over country areas at an hourly basis. Three types of forcing data were used: observations from an experimental campaign carried out during the 2008, 2009, and 2010 vegetative seasons in three vineyards, and values extracted from the freely available Global Land Data Assimilation System (GLDAS, versions 2.0 and 2.1). Since GLDAS also contains the outputs of the simulations performed using the Land Surface Model NOAH, an additional intercomparison between the two models, UTOPIA and NOAH, both driven by the same GLDAS datasets, was performed. The intercomparisons were performed on the following micro-meteorological variables: net radiation, sensible and latent turbulent heat fluxes, and temperature and humidity of soil. The results of this study indicate that the methodology of employing land surface models driven by a gridded database to evaluate variables of micro-meteorological and agronomic interest in the absence of observations is suitable and gives satisfactory results, with uncertainties comparable to measurement errors, thus, allowing us to also evaluate some time trends. The comparison between GLDAS2.0 and GLDAS2.1 indicates that the latter generally produces simulation outputs more similar to the observations than the former, using both UTOPIA and NOAH models.
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Foyer, C. H., Siddique, K. H. M., Tai, A. P. K., Anders, S., Fodor, N., Wong, F. - L., et al. (2019). Modelling predicts that soybean is poised to dominate crop production across Africa. Plant Cell Environ., 42(1), 373–385.
Abstract: The superior agronomic and human nutritional properties of grain legumes (pulses) make them an ideal foundation for future sustainable agriculture. Legume-based farming is particularly important in Africa, where small-scale agricultural systems dominate the food production landscape. Legumes provide an inexpensive source of protein and nutrients to African households as well as natural fertilization for the soil. Although the consumption of traditionally grown legumes has started to decline, the production of soybeans (Glycine max Merr.) is spreading fast, especially across southern Africa. Predictions of future land-use allocation and production show that the soybean is poised to dominate future production across Africa. Land use models project an expansion of harvest area, whereas crop models project possible yield increases. Moreover, a seed change in farming strategy is underway. This is being driven largely by the combined cash crop value of products such as oils and the high nutritional benefits of soybean as an animal feed. Intensification of soybean production has the potential to reduce the dependence of Africa on soybean imports. However, a successful “soybean bonanza” across Africa necessitates an intensive research, development, extension, and policy agenda to ensure that soybean genetic improvements and production technology meet future demands for sustainable production.
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