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De Swaef, T., Bellocchi, G., Aper, J., Lootens, P., & Roldan-Ruiz, I. (2019). Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality. J. Experim. Bot., 70(9), 2587–2604.
Abstract: Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized.
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Popp, A., Humpenöder, F., Weindl, I., Bodirsky, B. L., Bonsch, M., Lotze-Campen, H., et al. (2014). Land-use protection for climate change mitigation. Nat. Clim. Change, 4(12), 1095–1098.
Abstract: Land-use change, mainly the conversion of tropical forests to agricultural land, is a massive source of carbon emissions and contributes substantially to global warming(1-3). Therefore, mechanisms that aim to reduce carbon emissions from deforestation are widely discussed, A central challenge is the avoidance of international carbon leakage if forest conservation is not implemented globally’’, Here, We show that forest conservation schemes, even if implemented globally, could lead to another type of carbon leakage by driving cropland expansion in non-forested areas that are not subject to forest conservation schemes (non-forest leakage). These areas have a smaller. but still considerable potential to store carbon(5,6). We show that a global forest policy could reduce carbon emissions by 77 Gt CO2, but would still allow for decreases in carbon stocks of non-forest land by 96 Gt CO2, until 2100 due to non-forest leakage effects. Furthermore; abandonment of agricultural hand and associated carbon uptake through vegetation regrowth is hampered. Effective mitigation measures thus require financing structures and conservation investments that cover the full range of carbon-rich ecosystems. However, our analysis indicates that greater agricultural productivity increases would be needed to compensate for such restrictions on agricultural expansion.
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Kraus, D., Weller, S., Klatt, S., Haas, E., Wassmann, R., Kiese, R., et al. (2015). A new LandscapeDNDC biogeochemical module to predict CH4 and N2O emissions from lowland rice and upland cropping systems. Plant Soil, 386(1-2), 125–149.
Abstract: Replacing paddy rice by upland systems such as maize cultivation is an on-going trend in SE Asia caused by increasing water scarcity and higher demand for meat. How such land management changes will feedback on soil C and N cycles and soil greenhouse gas emissions is not well understood at present. A new LandscapeDNDC biogeochemical module was developed that allows the effect of land management changes on soil C and N cycle to be simulated. The new module is applied in combination with further modules simulating microclimate and crop growth and evaluated against observations from field experiments. The model simulations agree well with observed dynamics of CH (4) emissions in paddy rice depending on changes in climatic conditions and agricultural management. Magnitude and peak emission periods of N (2) O from maize cultivation are simulated correctly, though there are still deficits in reproducing day-to-day dynamics. These shortcomings are most likely related to simulated soil hydrology and may only be resolved if LandscapeDNDC is coupled to more complex hydrological models. LandscapeDNDC allows for simulation of changing land management practices in SE Asia. The possibility to couple LandscapeDNDC to more complex hydrological models is a feature needed to better understand related effects on soil-atmosphere-hydrosphere interactions.
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Özkan Gülzari, Ş., Vosough Ahmadi, B., & Stott, A. W. (2018). Impact of subclinical mastitis on greenhouse gas emissions intensity and profitability of dairy cows in Norway. Preventive Veterinary Medicine, 150, 19–29.
Abstract: Impaired animal health causes both productivity and profitability losses on dairy farms, resulting in inefficient use of inputs and increase in greenhouse gas (GHG) emissions produced per unit of product (i.e. emissions intensity). Here, we used subclinical mastitis as an exemplar to benchmark alternative scenarios against an economic optimum and adjusted herd structure to estimate the GHG emissions intensity associated with varying levels of disease. Five levels of somatic cell count (SCC) classes were considered namely 50,000 (i.e. SCC50), 200,000, 400,000, 600,000 and 800,000 cells/mL (milliliter) of milk. The effects of varying levels of SCC on milk yield reduction and consequential milk price penalties were used in a dynamic programming (DP) model that maximizes the profit per cow, represented as expected net present value, by choosing optimal animal replacement rates. The GHG emissions intensities associated with different levels of SCC were then computed using a farm-scale model (HolosNor). The total culling rates of both primiparous (PP) and multiparous (MP) cows for the five levels of SCC scenarios estimated by the model varied from a minimum of 30.9% to a maximum of 43.7%. The expected profit was the highest for cows with SCC200 due to declining margin over feed, which influenced the DP model to cull and replace more animals and generate higher profit under this scenario compared to SCC50. The GHG emission intensities for the PP and MP cows with SCC50 were 1.01 kg (kilogram) and 0.95 kg carbon dioxide equivalents (CO2e) per kg fat and protein corrected milk (FPCM), respectively, with the lowest emissions being achieved in SCC50. Our results show that there is a potential to reduce the farm GHG emissions intensity by 3.7% if the milk production was improved through reducing the level of SCC to 50,000 cells/mL in relation to SCC level 800,000 cells/mL. It was concluded that preventing and/or controlling subclinical mastitis consequently reduces the GHG emissions per unit of product on farm that results in improved profits for the farmers through reductions in milk losses, optimum culling rate and reduced feed and other variable costs. We suggest that further studies exploring the impact of a combination of diseases on emissions intensity are warranted.
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Schmitz, C., Kreidenweis, U., Lotze-Campen, H., Popp, A., Krause, M., Dietrich, J. P., et al. (2014). Agricultural trade and tropical deforestation: interactions and related policy options. Reg Environ Change, 15(8), 1757–1772.
Abstract: The extensive clearing of tropical forests throughout past decades has been partly assigned to increased trade in agricultural goods. Since further trade liberalisation can be expected, remaining rainforests are likely to face additional threats with negative implications for climate mitigation and the local environment. We apply a spatially explicit economic land-use model coupled to a biophysical vegetation model to examine linkages and associated policies between trade and tropical deforestation in the future. Results indicate that further trade liberalisation leads to an expansion of deforestation in Amazonia due to comparative advantages of agriculture in South America. Globally, between 30 and 60 million ha (5-10 %) of tropical rainforests would be cleared additionally, leading to 20-40 Gt additional emissions by 2050. By applying different forest protection policies, those values could be reduced substantially. Most effective would be the inclusion of avoided deforestation into a global emissions trading scheme. Carbon prices corresponding to the concentration target of 550 ppm would prevent deforestation after 2020. Investing in agricultural productivity reduces pressure on tropical forests without the necessity of direct protection. In general, additional trade-induced demand from developed and emerging countries should be compensated by international efforts to protect natural resources in tropical regions.
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