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Dumont, B., Leemans, V., Mansouri, M., Bodson, B., Destain, J. - P., & Destain, M. - F. (2014). Parameter identification of the STICS crop model, using an accelerated formal MCMC approach. Env. Model. Softw., 52, 121–135.
Abstract: This study presents a Bayesian approach for the parameters’ identification of the STICS crop model based on the recently developed Differential Evolution Adaptive Metropolis (DREAM) algorithm. The posterior distributions of nine specific crop parameters of the STICS model were sampled with the aim to improve the growth simulations of a winter wheat (Triticum aestivum L) culture. The results obtained with the DREAM algorithm were initially compared to those obtained with a Nelder-Mead Simplex algorithm embedded within the OptimiSTICS package. Then, three types of likelihood functions implemented within the DREAM algorithm were compared, namely the standard least square, the weighted least square, and a transformed likelihood function that makes explicit use of the coefficient of variation (CV). The results showed that the proposed CV likelihood function allowed taking into account both noise on measurements and heteroscedasticity which are regularly encountered in crop modelling. (C) 2013 Elsevier Ltd. All rights reserved.
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Sanna, M., Bellocchi, G., Fumagalli, M., & Acutis, M. (2015). A new method for analysing the interrelationship between performance indicators with an application to agrometeorological models. Env. Model. Softw., 73, 286–304.
Abstract: The use of a variety of metrics is advocated to assess model performance but correlated metrics may convey the same information, thus leading to redundancy. Starting from this assumption, a method was developed for selecting, from among a collection of performance indicators, one or more subsets providing the same information as the entire set. The method, based on the definition of “stable correlation”, was applied to 23 performance indicators of agrometeorological models, calculated on large sets of simulated and observed data of four agronomic and meteorological variables: above-ground biomass, leaf area index, hourly air relative humidity and daily solar radiation. Two subsets were determined: {Squared Bias, Root Mean Squared Relative Error, Coefficient of Determination, Pattern Index, Modified Modelling Efficiency}, {Persistence Model Efficiency, Root Mean Squared Relative Error, Coefficient of Determination, Pattern Index}. The method needs corroboration but is statistically founded and can support the implementation of standardized evaluation tools. (C) 2015 Elsevier Ltd. All rights reserved.
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De Swaef, T., Bellocchi, G., Aper, J., Lootens, P., & Roldan-Ruiz, I. (2019). Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality. J. Experim. Bot., 70(9), 2587–2604.
Abstract: Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized.
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Tao, F., Palosuo, T., Roetter, R. P., Hernandez Diaz-Ambrona, C. G., Ines Minguez, M., Semenov, M. A., et al. (2020). Why do crop models diverge substantially in climate impact projections? A comprehensive analysis based on eight barley crop models. Agricultural and Forest Meteorology, 281, 107851.
Abstract: Robust projections of climate impact on crop growth and productivity by crop models are key to designing effective adaptations to cope with future climate risk. However, current crop models diverge strongly in their climate impact projections. Previous studies tried to compare or improve crop models regarding the impact of one single climate variable. However, this approach is insufficient, considering that crop growth and yield are affected by the interactive impacts of multiple climate change factors and multiple interrelated biophysical processes. Here, a new comprehensive analysis was conducted to look holistically at the reasons why crop models diverge substantially in climate impact projections and to investigate which biophysical processes and knowledge gaps are key factors affecting this uncertainty and should be given the highest priorities for improvement. First, eight barley models and eight climate projections for the 2050s were applied to investigate the uncertainty from crop model structure in climate impact projections for barley growth and yield at two sites: Jokioinen, Finland (Boreal) and Lleida, Spain (Mediterranean). Sensitivity analyses were then conducted on the responses of major crop processes to major climatic variables including temperature, precipitation, irradiation, and CO2, as well as their interactions, for each of the eight crop models. The results showed that the temperature and CO2 relationships in the models were the major sources of the large discrepancies among the models in climate impact projections. In particular, the impacts of increases in temperature and CO2 on leaf area development were identified as the major causes for the large uncertainty in simulating changes in evapotranspiration, above-ground biomass, and grain yield. Our findings highlight that advancements in understanding the basic processes and thresholds by which climate warming and CO2 increases will affect leaf area development, crop evapotranspiration, photosynthesis, and grain formation in contrasting environments are needed for modeling their impacts.
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Gomara, I., Bellocchi, G., Martin, R., Rodriguez-Fonseca, B., & Ruiz-Ramos, M. (2020). Influence of climate variability on the potential forage production of a mown permanent grassland in the French Massif Central. Agricultural and Forest Meteorology, 280, 107768.
Abstract: Climate Services (CS) provide support to decision makers across socio-economic sectors. In the agricultural sector, one of the most important CS applications is to provide timely and accurate yield forecasts based on climate prediction. In this study, the Pasture Simulation model (PaSim) was used to simulate, for the period 1959–2015, the forage production of a mown grassland system (Laqueuille, Massif Central of France) under different management conditions, with meteorological inputs extracted from the SAFRAN atmospheric database. The aim was to generate purely climate-dependent timeseries of optimal forage production, a variable that was maximized by brighter and warmer weather conditions at the grassland. A long-term increase was observed in simulated forage yield, with the 1995–2015 average being 29% higher than the 1959–1979 average. Such increase seems consistent with observed rising trends in temperature and CO2, and multi-decadal changes in incident solar radiation. At interannual timescales, sea surface temperature anomalies of the Mediterranean (MED), Tropical North Atlantic (TNA), equatorial Pacific (El Niño Southern Oscillation) and the North Atlantic Oscillation (NAO) index were found robustly correlated with annual forage yield values. Relying only on climatic predictors, we developed a stepwise statistical multi-regression model with leave-one-out cross-validation. Under specific management conditions (e.g., three annual cuts) and from one to five months in advance, the generated model successfully provided a p-value<0.01 in correlation (t-test), a root mean square error percentage (%RMSE) of 14.6% and a 71.43% hit rate predicting above/below average years in terms of forage yield collection. This is the first modeling study on the possible role of large-scale oceanic–atmospheric teleconnections in driving forage production in Europe. As such, it provides a useful springboard to implement a grassland seasonal forecasting system in this continent.
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