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Author |
Van Oijen, M.; Höglind, M. |
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Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
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Journal Article |
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Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
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Volume |
207 |
Issue |
3 |
Pages |
627-643 |
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Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
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Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
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2016-10-31 |
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0014-2336 |
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CropM, ft_macsur |
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MA @ admin @ |
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4820 |
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Author |
Höglind, M.; Van Oijen, M.; Cameron, D.; Persson, T. |
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Title |
Process-based simulation of growth and overwintering of grassland using the BASGRA model |
Type |
Journal Article |
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Year |
2016 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
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Volume |
335 |
Issue |
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Pages |
1-15 |
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Keywords |
Cold hardening; Frost injury; Phleum pratense L.; Process-based; modelling; Winter survival; Yield; low-temperature tolerance; perennial forage crops; dry-matter; production; climate-change; nutritive-value; snow-cover; bayesian; calibration; timothy regrowth; phleum-pratense; lolium-perenne |
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Abstract |
Process-based models (PBM) for simulation of weather dependent grass growth can assist farmers and plant breeders in addressing the challenges of climate change by simulating alternative roads of adaptation. They can also provide management decision support under current conditions. A drawback of existing grass models is that they do not take into account the effect of winter stresses, limiting their use for full-year simulations in areas where winter survival is a key factor for yield security. Here, we present a novel full-year PBM for grassland named BASGRA. It was developed by combining the LINGRA grassland model (Van Oijen et al., 2005a) with models for cold hardening and soil physical winter processes. We present the model and show how it was parameterized for timothy (Phleum pratense L.), the most important forage grass in Scandinavia and parts of North America and Asia. Uniquely, BASGRA simulates the processes taking place in the sward during the transition from summer to winter, including growth cessation and gradual cold hardening, and functions for simulating plant injury due to low temperatures, snow and ice affecting regrowth in spring. For the calibration, we used detailed data from five different locations in Norway, covering a wide range of agroclimatic regions, day lengths (latitudes from 59 degrees to 70 degrees N) and soil conditions. The total dataset included 11 variables, notably above-ground dry matter, leaf area index, tiller density, content of C reserves, and frost tolerance. All data were used in the calibration. When BASGRA was run with the maximum a-posteriori (MAP) parameter vector from the single, Bayesian calibration, nearly all measured variables were simulated to an overall normalized root mean squared error (NRMSE) <0.5. For many site x experiment combinations, NRMSE was <0.3. The temporal dynamics were captured well for most variables, as evaluated by comparing simulated time courses versus data for the individual sites. The results may suggest that BASGRA is a reasonably robust model, allowing for simulation of growth and several important underlying processes with acceptable accuracy for a range of agroclimatic conditions. However, the robustness of the model needs to be tested further using independent data from a wide range of growing conditions. Finally we show an example of application of the model, comparing overwintering risks in two climatically different sites, and discuss future model applications. Further development work should include improved simulation of the dynamics of C reserves, and validation of winter tiller dynamics against independent data. (C) 2016 Elsevier B.V. All rights reserved. |
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2016-07-28 |
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0304-3800 |
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CropM, LiveM, ft_macsur |
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MA @ admin @ |
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4764 |
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Kipling, R.P.; Virkajärvi, P.; Breitsameter, L.; Curnel, Y.; De Swaef, T.; Gustavsson, A.-M.; Hennart, S.; Höglind, M.; Järvenranta, K.; Minet, J.; Nendel, C.; Persson, T.; Picon-Cochard, C.; Rolinski, S.; Sandars, D.L.; Scollan, N.D.; Sebek, L.; Seddaiu, G.; Topp, C.F.E.; Twardy, S.; Van Middelkoop, J.; Wu, L.; Bellocchi, G. |
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Title |
Key challenges and priorities for modelling European grasslands under climate change |
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Journal Article |
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Year |
2016 |
Publication |
Science of the Total Environment |
Abbreviated Journal |
Science of the Total Environment |
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Volume |
566-567 |
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Pages |
851-864 |
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Keywords |
Climate change; Grasslands; Horizon scanning; Livestock production; Models; Research agenda |
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Grassland-based ruminant production systems are integral to sustainable food production in Europe, converting plant materials indigestible to humans into nutritious food, while providing a range of environmental and cultural benefits. Climate change poses significant challenges for such systems, their productivity and the wider benefits they supply. In this context, grassland models have an important role in predicting and understanding the impacts of climate change on grassland systems, and assessing the efficacy of potential adaptation and mitigation strategies. In order to identify the key challenges for European grassland modelling under climate change, modellers and researchers from across Europe were consulted via workshop and questionnaire. Participants identified fifteen challenges and considered the current state of modelling and priorities for future research in relation to each. A review of literature was undertaken to corroborate and enrich the information provided during the horizon scanning activities. Challenges were in four categories relating to: 1) the direct and indirect effects of climate change on the sward 2) climate change effects on grassland systems outputs 3) mediation of climate change impacts by site, system and management and 4) cross-cutting methodological issues. While research priorities differed between challenges, an underlying theme was the need for accessible, shared inventories of models, approaches and data, as a resource for stakeholders and to stimulate new research. Developing grassland models to effectively support efforts to tackle climate change impacts, while increasing productivity and enhancing ecosystem services, will require engagement with stakeholders and policy-makers, as well as modellers and experimental researchers across many disciplines. The challenges and priorities identified are intended to be a resource 1) for grassland modellers and experimental researchers, to stimulate the development of new research directions and collaborative opportunities, and 2) for policy-makers involved in shaping the research agenda for European grassland modelling under climate change. |
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0048-9697 |
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LiveM, ft_macsur |
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MA @ admin @ |
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4761 |
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Author |
Persson, T.; Kværnø, S.; Höglind, M. |
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Title |
Impact of soil type extrapolation on timothy grass yield under baseline and future climate conditions in southeastern Norway |
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Journal Article |
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Year |
2015 |
Publication |
Climate Research |
Abbreviated Journal |
Clim. Res. |
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65 |
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71-86 |
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Keywords |
climate change scenarios; crop modelling; forage grass; lingra; soil properties; spatial variability; phleum pretense; poaceae; simulation-model; nutritive-value; systems simulation; catimo model; crop models; growth; nitrogen; scale; productivity; regrowth |
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Interactions between soil properties and climate affect forage grass productivity. Dynamic models, simulating crop performance as a function of environmental conditions, are valid for a specific location with given soil and weather conditions. Extrapolations of local soil properties to larger regions can help assess the requirement for soil input in regional yield estimations. Using the LINGRA model, we simulated the regional yield level and variability of timothy, a forage grass, in Akershus and Ostfold counties, Norway. Soils were grouped according to physical similarities according to 4 sets of criteria. This resulted in 66, 15, 5 and 1 groups of soils. The properties of the soil with the largest area was extrapolated to the other soils within each group and input to the simulations. All analyses were conducted for 100 yr of generated weather representing the period 1961-1990, and climate projections for the period 2046-2065, the Intergovernmental Panel on Climate Change greenhouse gas emission scenario A1B, and 4 global climate models. The simulated regional seasonal timothy yields were 5-13% lower on average and had higher inter-annual variability for the least detailed soil extrapolation than for the other soil extrapolations, across climates. There were up to 20% spatial intra-regional differences in simulated yield between soil extrapolations. The results indicate that, for conditions similar to these studied here, a few representative profiles are sufficient for simulations of average regional seasonal timothy yield. More spatially detailed yield analyses would benefit from more detailed soil input. |
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0936-577x 1616-1572 |
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CropM, ft_macsur |
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MA @ admin @ |
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4674 |
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Author |
Kässi, P.; Känkänen, H.; Niskanen, O.; Lehtonen, H.; Höglind, M. |
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Title |
Farm level approach to manage grass yield variation under climate change in Finland and north-western Russia |
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Journal Article |
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2015 |
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Biosystems Engineering |
Abbreviated Journal |
Biosystems Engineering |
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140 |
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11-22 |
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silage grass; risk management; dairy farms; buffer storage; agricultural economics; grassland modelling; dairy-cows; impact; security; timothy; harvest; future; growth; norway; europe; time |
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Cattle feeding in Northern Europe is based on grass silage, but grass growth is highly dependent on weather conditions. If ensuring sufficient silage availability in every situation is prioritised, the lowest expected yield level determines the cultivated area in farmers’ decision-making. One way to manage the variation in grass yield is to increase grass production and silage storage capacity so that they exceed the annual consumption at the farm. The cost of risk management in the current and the projected future climate was calculated taking into account grassland yield and yield variability for three study areas under current and mid-21st century climate conditions. The dataset on simulated future grass yields used as input for the risk management calculations were taken from a previously published simulation study. Strategies investigated included using up to 60% more silage grass area than needed in a year with average grass yields, and storing silage for up to 6 months more than consumed in a year (buffer storage). According to the results, utilising an excess silage grass area of 20% and a silage buffer storage capacity of 6 months were the most economic ways of managing drought risk in both the baseline climate and the projected climate of 2046-2065. It was found that the silage yield risk due to drought is likely to decrease in all studied locations, but the drought risk and costs implied still remain significant. (C) 2015 IAgrE. Published by Elsevier Ltd. All rights reserved. |
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1537-5110 |
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TradeM |
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MA @ admin @ |
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4671 |
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