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Ben Touhami, H.; Bellocchi, G. |
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Title |
Bayesian calibration of the Pasture Simulation model (PaSim) to simulate European grasslands under water stress |
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Journal Article |
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Year |
2015 |
Publication |
Ecological Informatics |
Abbreviated Journal |
Ecological Informatics |
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Volume |
30 |
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Pages |
356-364 |
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Keywords |
Bayesian calibration framework; Grasslands; Pasture Simulation model; (PaSim); integrated assessment models; chain monte-carlo; climate-change; computation; impacts; vulnerability; likelihoods; france |
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Abstract |
As modeling becomes a more widespread practice in the agro-environmental sciences, scientists need reliable tools to calibrate models against ever more complex and detailed data. We present a generic Bayesian computation framework for grassland simulation, which enables parameter estimation in the Bayesian formalism by using Monte Carlo approaches. We outline the underlying rationale, discuss the computational issues, and provide results from an application of the Pasture Simulation model (PaSim) to three European grasslands. The framework was suited to investigate the challenging problem of calibrating complex biophysical models to data from altered scenarios generated by precipitation reduction (water stress conditions). It was used to infer the parameters of manipulated grassland systems and to assess the gain in uncertainty reduction by updating parameter distributions using measurements of the output variables. |
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1574-9541 |
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CropM, LiveM, ft_macsur |
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MA @ admin @ |
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4697 |
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Author |
Sanna, M.; Bellocchi, G.; Fumagalli, M.; Acutis, M. |
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Title |
A new method for analysing the interrelationship between performance indicators with an application to agrometeorological models |
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Journal Article |
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Year |
2015 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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73 |
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286-304 |
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model evaluation; performance indicators; stable correlation; solar-radiation; simulation-model; environmental-models; statistical-methods; crop nitrogen; validation; rice; uncertainty; calibration; software |
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The use of a variety of metrics is advocated to assess model performance but correlated metrics may convey the same information, thus leading to redundancy. Starting from this assumption, a method was developed for selecting, from among a collection of performance indicators, one or more subsets providing the same information as the entire set. The method, based on the definition of “stable correlation”, was applied to 23 performance indicators of agrometeorological models, calculated on large sets of simulated and observed data of four agronomic and meteorological variables: above-ground biomass, leaf area index, hourly air relative humidity and daily solar radiation. Two subsets were determined: {Squared Bias, Root Mean Squared Relative Error, Coefficient of Determination, Pattern Index, Modified Modelling Efficiency}, {Persistence Model Efficiency, Root Mean Squared Relative Error, Coefficient of Determination, Pattern Index}. The method needs corroboration but is statistically founded and can support the implementation of standardized evaluation tools. (C) 2015 Elsevier Ltd. All rights reserved. |
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1364-8152 |
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CropM LiveM, ftnotmacsur |
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MA @ admin @ |
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4503 |
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Ma, S.; Lardy, R.; Graux, A.-I.; Ben Touhami, H.; Klumpp, K.; Martin, R.; Bellocchi, G. |
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Title |
Regional-scale analysis of carbon and water cycles on managed grassland systems |
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Journal Article |
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Year |
2015 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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Volume |
72 |
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356-371 |
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Keywords |
carbon flux; eddy flux measurements; model evaluation; pasture simulation model (pasim); water balance; pasture simulation-model; nitrous-oxide emissions; primary productivity npp; comparing global-models; net ecosystem exchange; greenhouse-gas balance; climate-change; agricultural systems; co2 exchange; european grasslands |
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Predicting regional and global carbon (C) and water dynamics on grasslands has become of major interest, as grasslands are one of the most widespread vegetation types worldwide, providing a number of ecosystem services (such as forage production and C storage). The present study is a contribution to a regional-scale analysis of the C and water cycles on managed grasslands. The mechanistic biogeochemical model PaSim (Pasture Simulation model) was evaluated at 12 grassland sites in Europe. A new parameterization was obtained on a common set of eco-physiological parameters, which represented an improvement of previous parameterization schemes (essentially obtained via calibration at specific sites). We found that C and water fluxes estimated with the parameter set are in good agreement with observations. The model with the new parameters estimated that European grassland are a sink of C with 213 g C m(-2) yr(-1), which is close to the observed net ecosystem exchange (NEE) flux of the studied sites (185 g C m(-2) yr(-1) on average). The estimated yearly average gross primary productivity (GPP) and ecosystem respiration (RECO) for all of the study sites are 1220 and 1006 g C m(-2) yr(-1), respectively, in agreement with observed average GPP (1230 g C m(-2) yr(-1)) and RECO (1046 g C m(-2) yr(-1)). For both variables aggregated on a weekly basis, the root mean square error (RMSE) was similar to 5-16 g C week(-1) across the study sites, while the goodness of fit (R-2) was similar to 0.4-0.9. For evapotranspiration (ET), the average value of simulated ET (415 mmyr(-1)) for all sites and years is close to the average value of the observed ET (451 mm yr(-1)) by flux towers (on a weekly basis, RMSE similar to 2-8 mm week(-1); R-2 = 0.3-0.9). However, further model development is needed to better represent soil water dynamics under dry conditions and soil temperature in winter. A quantification of the uncertainties introduced by spatially generalized parameter values in C and water exchange estimates is also necessary. In addition, some uncertainties in the input management data call for the need to improve the quality of the observational system. |
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2015-10-09 |
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1364-8152 |
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CropM, LiveM, ft_macsur |
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MA @ admin @ |
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4695 |
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Sándor, R.; Barcza, Z.; Acutis, M.; Doro, L.; Hidy, D.; Köchy, M.; Minet, J.; Lellei-Kovács, E.; Ma, S.; Perego, A.; Rolinski, S.; Ruget, F.; Sanna, M.; Seddaiu, G.; Wu, L.; Bellocchi, G. |
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Title |
Multi-model simulation of soil temperature, soil water content and biomass in Euro-Mediterranean grasslands: Uncertainties and ensemble performance |
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Journal Article |
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Year |
2016 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
European Journal of Agronomy |
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Keywords |
Biomass; Grasslands; Modelling; Multi-model ensemble; Soil processes |
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• We simulate biomass, soil water content (SWC) and temperature (ST) in grasslands. • We compare nine models to the multi-model median (MMM) at nine sites. • With model calibration, we obtain satisfactory estimates of ST, less of SWC and biomass. • We observe discrepancies across models in the simulation of grassland processes. • We improve performance with multi-model approach. This study presents results from a major grassland model intercomparison exercise, and highlights the main challenges faced in the implementation of a multi-model ensemble prediction system in grasslands. Nine, independently developed simulation models linking climate, soil, vegetation and management to grassland biogeochemical cycles and production were compared in a simulation of soil water content (SWC) and soil temperature (ST) in the topsoil, and of biomass production. The results were assessed against SWC and ST data from five observational grassland sites representing a range of conditions – Grillenburg in Germany, Laqueuille in France with both extensive and intensive management, Monte Bondone in Italy and Oensingen in Switzerland – and against yield measurements from the same sites and other experimental grassland sites in Europe and Israel. We present a comparison of model estimates from individual models to the multi-model ensemble (represented by multi-model median: MMM). With calibration (seven out of nine models), the performances were acceptable for weekly-aggregated ST (R² > 0.7 with individual models and >0.8–0.9 with MMM), but less satisfactory with SWC (R² < 0.6 with individual models and < ∼ 0.5 with MMM) and biomass (R² < ∼0.3 with both individual models and MMM). With individual models, maximum biases of about −5 °C for ST, −0.3 m3 m−3 for SWC and 360 g DM m−2 for yield, as well as negative modelling efficiencies and some high relative root mean square errors indicate low model performance, especially for biomass. We also found substantial discrepancies across different models, indicating considerable uncertainties regarding the simulation of grassland processes. The multi-model approach allowed for improved performance, but further progress is strongly needed in the way models represent processes in managed grassland systems. |
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1161-0301 |
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MA @ admin @ |
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4768 |
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Kipling, R.P.; Bannink, A.; Bellocchi, G.; Dalgaard, T.; Fox, N.J.; Hutchings, N.J.; Kjeldsen, C.; Lacetera, N.; Sinabell, F.; Topp, C.F.E.; van Oijen, M.; Virkajärvi, P.; Scollan, N.D. |
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Title |
Modeling European ruminant production systems: Facing the challenges of climate change |
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Journal Article |
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Year |
2016 |
Publication |
Agricultural Systems |
Abbreviated Journal |
Agricultural Systems |
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Volume |
147 |
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24-37 |
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Keywords |
Food security; Livestock systems; Modeling; Pastoral systems; Policy support; Ruminants |
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Ruminant production systems are important producers of food, support rural communities and culture, and help to maintain a range of ecosystem services including the sequestering of carbon in grassland soils. However, these systems also contribute significantly to climate change through greenhouse gas (GHG) emissions, while intensi- fication of production has driven biodiversity and nutrient loss, and soil degradation. Modeling can offer insights into the complexity underlying the relationships between climate change, management and policy choices, food production, and the maintenance of ecosystem services. This paper 1) provides an overview of how ruminant systems modeling supports the efforts of stakeholders and policymakers to predict, mitigate and adapt to climate change and 2) provides ideas for enhancing modeling to fulfil this role. Many grassland models can predict plant growth, yield and GHG emissions from mono-specific swards, but modeling multi-species swards, grassland quality and the impact of management changes requires further development. Current livestock models provide a good basis for predicting animal production; linking these with models of animal health and disease is a prior- ity. Farm-scale modeling provides tools for policymakers to predict the emissions of GHG and other pollutants from livestock farms, and to support the management decisions of farmers from environmental and economic standpoints. Other models focus on how policy and associated management changes affect a range of economic and environmental variables at regional, national and European scales. Models at larger scales generally utilise more empirical approaches than those applied at animal, field and farm-scales and include assumptions which may not be valid under climate change conditions. It is therefore important to continue to develop more realistic representations of processes in regional and global models, using the understanding gained from finer-scale modeling. An iterative process of model development, in which lessons learnt from mechanistic models are ap- plied to develop ‘smart’ empirical modeling, may overcome the trade-off between complexity and usability. De- veloping the modeling capacity to tackle the complex challenges related to climate change, is reliant on closer links between modelers and experimental researchers, and also requires knowledge-sharing and increasing technical compatibility across modeling disciplines. Stakeholder engagement throughout the process of model development and application is vital for the creation of relevant models, and important in reducing problems re- lated to the interpretation of modeling outcomes. Enabling modeling to meet the demands of policymakers and other stakeholders under climate change will require collaboration within adequately-resourced, long-term inter-disciplinary research networks |
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0308521x |
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Review |
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LiveM, ft_macsur |
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MA @ admin @ |
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4734 |
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