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Author |
Dumont, B.; Leemans, V.; Mansouri, M.; Bodson, B.; Destain, J.-P.; Destain, M.-F. |
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Title |
Parameter identification of the STICS crop model, using an accelerated formal MCMC approach |
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Journal Article |
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Year  |
2014 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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Volume |
52 |
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Pages |
121-135 |
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Keywords |
crop model; parameter estimation; bayes; stics; dream; global sensitivity-analysis; simulation-model; nitrogen balances; bayesian-approach; generic model; wheat; prediction; water; optimization; algorithm |
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Abstract |
This study presents a Bayesian approach for the parameters’ identification of the STICS crop model based on the recently developed Differential Evolution Adaptive Metropolis (DREAM) algorithm. The posterior distributions of nine specific crop parameters of the STICS model were sampled with the aim to improve the growth simulations of a winter wheat (Triticum aestivum L) culture. The results obtained with the DREAM algorithm were initially compared to those obtained with a Nelder-Mead Simplex algorithm embedded within the OptimiSTICS package. Then, three types of likelihood functions implemented within the DREAM algorithm were compared, namely the standard least square, the weighted least square, and a transformed likelihood function that makes explicit use of the coefficient of variation (CV). The results showed that the proposed CV likelihood function allowed taking into account both noise on measurements and heteroscedasticity which are regularly encountered in crop modelling. (C) 2013 Elsevier Ltd. All rights reserved. |
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1364-8152 |
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CropM |
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Call Number |
MA @ admin @ |
Serial |
4520 |
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Author |
Bodirsky, B.L.; Popp, A.; Lotze-Campen, H.; Dietrich, J.P.; Rolinski, S.; Weindl, I.; Schmitz, C.; Müller, C.; Bonsch, M.; Humpenöder, F.; Biewald, A.; Stevanovic, M. |
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Title |
Reactive nitrogen requirements to feed the world in 2050 and potential to mitigate nitrogen pollution |
Type |
Journal Article |
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Year |
2014 |
Publication |
Nature Communications |
Abbreviated Journal |
Nat. Comm. |
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Volume |
5 |
Issue |
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Pages |
3858 |
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Keywords |
Animals; Crops, Agricultural/metabolism/*supply & distribution; Environmental Pollution/*prevention & control; *Food Supply; Humans; Models, Theoretical; Nitrogen Fixation; *Population Growth; Reactive Nitrogen Species/*supply & distribution |
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Abstract |
Reactive nitrogen (Nr) is an indispensable nutrient for agricultural production and human alimentation. Simultaneously, agriculture is the largest contributor to Nr pollution, causing severe damages to human health and ecosystem services. The trade-off between food availability and Nr pollution can be attenuated by several key mitigation options, including Nr efficiency improvements in crop and animal production systems, food waste reduction in households and lower consumption of Nr-intensive animal products. However, their quantitative mitigation potential remains unclear, especially under the added pressure of population growth and changes in food consumption. Here we show by model simulations, that under baseline conditions, Nr pollution in 2050 can be expected to rise to 102-156% of the 2010 value. Only under ambitious mitigation, does pollution possibly decrease to 36-76% of the 2010 value. Air, water and atmospheric Nr pollution go far beyond critical environmental thresholds without mitigation actions. Even under ambitious mitigation, the risk remains that thresholds are exceeded. |
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2041-1723 |
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CropM |
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MA @ admin @ |
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4513 |
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Author |
Bodirsky, B.L.; Müller, C. |
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Title |
Robust relationship between yields and nitrogen inputs indicates three ways to reduce nitrogen pollution |
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Journal Article |
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Year |
2014 |
Publication |
Environmental Research Letters |
Abbreviated Journal |
Environ. Res. Lett. |
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Volume |
9 |
Issue |
11 |
Pages |
111005 |
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Keywords |
nitrogen use efficiency; nitrogen; fertilizer; nitrogen pollution; agriculture; yields; mitigation; framework |
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Historic increases in agricultural production came at the expense of substantial environmental burden through nitrogen pollution. Lassaletta et al (2014 Environ. Res. Lett. 9 105011) examine the historic relationship of crop yields and nitrogen fertilizer inputs globally and find a simple and robust relationship of declining nitrogen use efficiency with increasing nitrogen inputs. This general relationship helps to understand the dilemma between increased agricultural production and nitrogen pollution and allows identifying pathways towards more sustainable agricultural production and necessary associated policies. |
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1748-9326 |
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CropM, ft_macsur |
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no |
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Call Number |
MA @ admin @ |
Serial |
4514 |
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Author |
Comadira, G.; Rasool, B.; Karpinska, B.; Morris, J.; Verrall, S.R.; Hedley, P.E.; Foyer, C.H.; Hancock, R.D. |
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Title |
Nitrogen deficiency in barley (Hordeum vulgare) seedlings induces molecular and metabolic adjustments that trigger aphid resistance |
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Journal Article |
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Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
66 |
Issue |
12 |
Pages |
3639-3655 |
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Keywords |
Animals; Aphids/drug effects/*physiology; Biomass; Carbon/pharmacology; Chlorophyll/metabolism; Cluster Analysis; *Disease Resistance/drug effects; Gases/metabolism; Gene Expression Regulation, Plant/drug effects; Hordeum/drug effects/genetics/*parasitology; Nitrogen/*deficiency/metabolism/pharmacology; Oxidation-Reduction/drug effects; Photosynthesis/drug effects; Plant Diseases/genetics/*parasitology; Plant Leaves/drug effects/genetics/metabolism; Plant Proteins/genetics/metabolism; Plant Shoots/drug effects/metabolism; RNA, Messenger/genetics/metabolism; Secondary Metabolism/drug effects; Seedlings/drug effects/*metabolism/*parasitology; Signal Transduction/drug effects; Thylakoids/drug effects/metabolism/parasitology; Transcription Factors/metabolism; Transcriptome/genetics; Cross-tolerance; Myzus persicae; kinase cascades; metabolite profiles; nitrogen limitation; oxidative stress; sugar signalling |
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Agricultural nitrous oxide (N2O) pollution resulting from the use of synthetic fertilizers represents a significant contribution to anthropogenic greenhouse gas emissions, providing a rationale for reduced use of nitrogen (N) fertilizers. Nitrogen limitation results in extensive systems rebalancing that remodels metabolism and defence processes. To analyse the regulation underpinning these responses, barley (Horedeum vulgare) seedlings were grown for 7 d under N-deficient conditions until net photosynthesis was 50% lower than in N-replete controls. Although shoot growth was decreased there was no evidence for the induction of oxidative stress despite lower total concentrations of N-containing antioxidants. Nitrogen-deficient barley leaves were rich in amino acids, sugars and tricarboxylic acid cycle intermediates. In contrast to N-replete leaves one-day-old nymphs of the green peach aphid (Myzus persicae) failed to reach adulthood when transferred to N-deficient barley leaves. Transcripts encoding cell, sugar and nutrient signalling, protein degradation and secondary metabolism were over-represented in N-deficient leaves while those associated with hormone metabolism were similar under both nutrient regimes with the exception of mRNAs encoding proteins involved in auxin metabolism and responses. Significant similarities were observed between the N-limited barley leaf transcriptome and that of aphid-infested Arabidopsis leaves. These findings not only highlight significant similarities between biotic and abiotic stress signalling cascades but also identify potential targets for increasing aphid resistance with implications for the development of sustainable agriculture. |
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2016-10-31 |
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English |
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0022-0957 1460-2431 |
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CropM |
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Call Number |
MA @ admin @ |
Serial |
4787 |
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Author |
Doltra, J.; Olesen, J.E.; Báez, D.; Louro, A.; Chirinda, N. |
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Title |
Modeling nitrous oxide emissions from organic and conventional cereal-based cropping systems under different management, soil and climate factors |
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Journal Article |
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Year |
2015 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
European Journal of Agronomy |
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66 |
Issue |
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8-20 |
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Keywords |
greenhouse gas emissions; nitrogen losses; fasset process-based model; mitigation; crop management; n2o emissions; agricultural soils; cover crops; simulation; matter; wheat; uncertainty; variability; fertilizer; rotation |
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Mitigation of greenhouse gas emissions from agriculture should be assessed across cropping systems and agroclimatic regions. In this study, we investigate the ability of the FASSET model to analyze differences in the magnitude of N2O emissions due to soil, climate and management factors in cereal-based cropping systems. Forage maize was grown in a conventional dairy system at Mabegondo (NW Spain) and wheat and barley in organic and conventional crop rotations at Foulum (NW Denmark). These two European sites represent agricultural areas with high and low to moderate emission levels, respectively. Field trials included plots with and without catch crops that were fertilized with either mineral N fertilizer, cattle slurry, pig slurry or digested manure. Non-fertilized treatments were also included. Measurements of N2O fluxes during the growing cycle of all the crops at both sites were performed with the static chamber method with more frequent measurements post-fertilization and biweekly measurements when high fluxes were not expected. All cropping systems were simulated with the FASSET version 2.5 simulation model. Cumulative soil seasonal N2O emissions were about ten-fold higher at Mabegondo than at Foulum when averaged across systems and treatments (8.99 and 0.71 kg N2O-N ha(-1), respectively). The average simulated cumulative soil N2O emissions were 9.03 and 1.71 kg N2O-N ha(-1) at Mabegondo and at Foulum, respectively. Fertilization, catch crops and cropping systems had lower influence on the seasonal soil N2O fluxes than the environmental factors. Overall, in its current version FASSET reproduced the effects of the different factors investigated on the cumulative seasonal soil N2O emissions but temporally it overestimated emissions from nitrification and denitrification on particular days when soil operations, ploughing or fertilization, took place. The errors associated with simulated daily soil N2O fluxes increased with the magnitude of the emissions. For resolving causes of differences in simulated and measured fluxes more intensive and temporally detailed measurements of N2O fluxes and soil C and N dynamics would be needed. (C) 2015 Elsevier B.V. All rights reserved. |
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English |
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1161-0301 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4748 |
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