| |
Records |
Links |
|
Author |
De Swaef, T.; Bellocchi, G.; Aper, J.; Lootens, P.; Roldan-Ruiz, I. |
|
| |
Title  |
Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality |
Type |
Journal Article |
| |
Year |
2019 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
|
| |
Volume |
70 |
Issue |
9 |
Pages |
2587-2604 |
|
| |
Keywords |
Breeding; grassland modelling; identifiability analysis; perennial; ryegrass; phenotyping; sensitivity analysis; pasture simulation-model; practical identifiability; crop; water; parameters; systems; carbon; uncertainty; sensitivity; emissions |
|
| |
Abstract |
Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized. |
|
| |
Address |
2020-02-14 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
English |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0022-0957 |
ISBN |
|
Medium |
Article |
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
LiveM, ft_macsur |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
5231 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Rötter, R.P.; Tao, F.; Höhn, J.G.; Palosuo, T. |
|
| |
Title |
Use of crop simulation modelling to aid ideotype design of future cereal cultivars |
Type |
Journal Article |
| |
Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
|
| |
Volume |
66 |
Issue |
12 |
Pages |
3463-3476 |
|
| |
Keywords |
Breeding/*methods; Climate Change; *Computer Simulation; Ecotype; Edible Grain/*growth & development; *Models, Theoretical; cereals; climate extremes; crop growth simulation; ensemble modelling; future cultivars; genetic modelling; ideotype breeding; model improvement; model-aided design |
|
| |
Abstract |
A major challenge of the 21st century is to achieve food supply security under a changing climate and roughly a doubling in food demand by 2050 compared to present, the majority of which needs to be met by the cereals wheat, rice, maize, and barley. Future harvests are expected to be especially threatened through increased frequency and severity of extreme events, such as heat waves and drought, that pose particular challenges to plant breeders and crop scientists. Process-based crop models developed for simulating interactions between genotype, environment, and management are widely applied to assess impacts of environmental change on crop yield potentials, phenology, water use, etc. During the last decades, crop simulation has become important for supporting plant breeding, in particular in designing ideotypes, i.e. ‘model plants’, for different crops and cultivation environments. In this review we (i) examine the main limitations of crop simulation modelling for supporting ideotype breeding, (ii) describe developments in cultivar traits in response to climate variations, and (iii) present examples of how crop simulation has supported evaluation and design of cereal cultivars for future conditions. An early success story for rice demonstrates the potential of crop simulation modelling for ideotype breeding. Combining conventional crop simulation with new breeding methods and genetic modelling holds promise to accelerate delivery of future cereal cultivars for different environments. Robustness of model-aided ideotype design can further be enhanced through continued improvements of simulation models to better capture effects of extremes and the use of multi-model ensembles. |
|
| |
Address |
2016-10-31 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
English |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0022-0957 1460-2431 |
ISBN |
|
Medium |
Review |
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
CropM, ft_macsur |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
4804 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Challinor, A.J.; Smith, M.S.; Thornton, P. |
|
| |
Title |
Use of agro-climate ensembles for quantifying uncertainty and informing adaptation |
Type |
Journal Article |
| |
Year |
2013 |
Publication |
Agricultural and Forest Meteorology |
Abbreviated Journal |
Agricultural and Forest Meteorology |
|
| |
Volume |
170 |
Issue |
|
Pages |
2-7 |
|
| |
Keywords |
Climate models; Crop models; Ensembles; Climate change; Adaptation; Food security; Climate variability; Uncertainty; Crop yield |
|
| |
Abstract |
► Introduces the special issue on Agricultural prediction using climate model ensembles. ► Discuss remaining scientific challenges. ► Develops distinction between projection- and utility-based ensemble modelling. ► Recommendations made RE modelling and the analysis and reporting of uncertainty. Significant progress has been made in the use of ensemble agricultural and climate modelling, and observed data, to project future productivity and to develop adaptation options. An increasing number of agricultural models are designed specifically for use with climate ensembles, and improved methods to quantify uncertainty in both climate and agriculture have been developed. Whilst crop–climate relationships are still the most common agricultural study of this sort, on-farm management, hydrology, pests, diseases and livestock are now also examined. This paper introduces all of these areas of progress, with more detail being found in the subsequent papers in the special issue. Remaining scientific challenges are discussed, and a distinction is developed between projection- and utility-based approaches to agro-climate ensemble modelling. Recommendations are made regarding the manner in which uncertainty is analysed and reported, and the way in which models and data are used to make inferences regarding the future. A key underlying principle is the use of models as tools from which information is extracted, rather than as competing attempts to represent reality. |
|
| |
Address |
2015-09-23 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
English |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0168-1923 |
ISBN |
|
Medium |
Article |
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
CropM, ftnotmacsur |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
4690 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Özkan Gülzari, Ş.; Kipling, R. |
|
| |
Title |
Understanding the potential of existing models to characterize animal health conditions and estimate greenhouse gas emissions |
Type |
Report |
| |
Year |
2017 |
Publication |
FACCE MACSUR Reports |
Abbreviated Journal |
|
|
| |
Volume |
10 |
Issue |
|
Pages |
L2.2-D2 |
|
| |
Keywords |
|
|
| |
Abstract |
The primary objective of this study was to assess the status and priorities for future development in modelling of the impacts of animal health on greenhouse gas (GHG) emissions. It also aimed to facilitate communication between experimental researchers and modellers by defining a list of parameters that are needed to model livestock health and disease, and the impact of health conditions on GHG emissions. The summary presented here provides a brief overview of ongoing work, which the L2.1/L2.2 partners, with support from the Global Research Alliance Animal Health Network (GRA AHN), is currently developing into a paper for publication in a peer reviewed journal. |
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
LiveM |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
4979 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Sandars, D. |
|
| |
Title |
Understanding Europe’s future ability to feed itself within an uncertain climate change and socio economic scenario space |
Type |
|
| |
Year |
2015 |
Publication |
FACCE MACSUR Reports |
Abbreviated Journal |
|
|
| |
Volume |
5 |
Issue |
|
Pages |
Sp5-54 |
|
| |
Keywords |
|
|
| |
Abstract |
Europe’s ability to feed its population depends on the balance of agricultural productivity (yields and land suitability) and demand which are affected by future climate and socio-economic change (arising from changing food demand; prices; technology change etc). Land use under 2050 climate change and socio-economic scenarios can be rapidly and systematically quantified with a modelling system that has been developed from meta-models of optimal cropping and crop and forest yields derived from the outputs of the previously developed complex models (Audsley et al; 2015). Profitability of each possible land use is modelled for every soil in every grid across the EU. Land use in a grid is then allocated based on profit thresholds set for intensive agriculture extensive agriculture, managed forest and finally unmanaged forest or unmanaged land. The European demand for food as a function of population, imports, food preferences and bioenergy, is a production constraint, as is irrigation water available. The model iterates until demand is satisfied (or cannot be met at any price). Results are presented as contour plots of key variables. For example, given a 40% increase in population from the baseline socio-economic scenario, adapting by increasing crop yields by 40% will leave a 38% probability that the 2050 future climate will be such that we cannot feed ourselves – considering “all” the possible climate scenarios. No Label |
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
MACSUR Science Conference 2015 »Integrated Climate Risk Assessment in Agriculture & Food«, 8–9+10 April 2015, Reading, UK |
|
| |
Notes |
|
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
2169 |
|
| Permanent link to this record |
