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De Swaef, T., Bellocchi, G., Aper, J., Lootens, P., & Roldan-Ruiz, I. (2019). Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality. J. Experim. Bot., 70(9), 2587–2604.
Abstract: Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized.
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Rötter, R. P., Tao, F., Höhn, J. G., & Palosuo, T. (2015). Use of crop simulation modelling to aid ideotype design of future cereal cultivars. J. Experim. Bot., 66(12), 3463–3476.
Abstract: A major challenge of the 21st century is to achieve food supply security under a changing climate and roughly a doubling in food demand by 2050 compared to present, the majority of which needs to be met by the cereals wheat, rice, maize, and barley. Future harvests are expected to be especially threatened through increased frequency and severity of extreme events, such as heat waves and drought, that pose particular challenges to plant breeders and crop scientists. Process-based crop models developed for simulating interactions between genotype, environment, and management are widely applied to assess impacts of environmental change on crop yield potentials, phenology, water use, etc. During the last decades, crop simulation has become important for supporting plant breeding, in particular in designing ideotypes, i.e. ‘model plants’, for different crops and cultivation environments. In this review we (i) examine the main limitations of crop simulation modelling for supporting ideotype breeding, (ii) describe developments in cultivar traits in response to climate variations, and (iii) present examples of how crop simulation has supported evaluation and design of cereal cultivars for future conditions. An early success story for rice demonstrates the potential of crop simulation modelling for ideotype breeding. Combining conventional crop simulation with new breeding methods and genetic modelling holds promise to accelerate delivery of future cereal cultivars for different environments. Robustness of model-aided ideotype design can further be enhanced through continued improvements of simulation models to better capture effects of extremes and the use of multi-model ensembles.
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Challinor, A. J., Smith, M. S., & Thornton, P. (2013). Use of agro-climate ensembles for quantifying uncertainty and informing adaptation. Agricultural and Forest Meteorology, 170, 2–7.
Abstract: ► Introduces the special issue on Agricultural prediction using climate model ensembles. ► Discuss remaining scientific challenges. ► Develops distinction between projection- and utility-based ensemble modelling. ► Recommendations made RE modelling and the analysis and reporting of uncertainty. Significant progress has been made in the use of ensemble agricultural and climate modelling, and observed data, to project future productivity and to develop adaptation options. An increasing number of agricultural models are designed specifically for use with climate ensembles, and improved methods to quantify uncertainty in both climate and agriculture have been developed. Whilst crop–climate relationships are still the most common agricultural study of this sort, on-farm management, hydrology, pests, diseases and livestock are now also examined. This paper introduces all of these areas of progress, with more detail being found in the subsequent papers in the special issue. Remaining scientific challenges are discussed, and a distinction is developed between projection- and utility-based approaches to agro-climate ensemble modelling. Recommendations are made regarding the manner in which uncertainty is analysed and reported, and the way in which models and data are used to make inferences regarding the future. A key underlying principle is the use of models as tools from which information is extracted, rather than as competing attempts to represent reality.
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Asseng, S., Ewert, F., Rosenzweig, C., Jones, J. W., Hatfield, J. L., Ruane, A. C., et al. (2013). Uncertainty in simulating wheat yields under climate change. Nat. Clim. Change, 3(9), 827–832.
Abstract: Projections of climate change impacts on crop yields are inherently uncertain(1). Uncertainty is often quantified when projecting future greenhouse gas emissions and their influence on climate(2). However, multi-model uncertainty analysis of crop responses to climate change is rare because systematic and objective comparisons among process-based crop simulation models(1,3) are difficult(4). Here we present the largest standardized model intercomparison for climate change impacts so far. We found that individual crop models are able to simulate measured wheat grain yields accurately under a range of environments, particularly if the input information is sufficient. However, simulated climate change impacts vary across models owing to differences in model structures and parameter values. A greater proportion of the uncertainty in climate change impact projections was due to variations among crop models than to variations among downscaled general circulation models. Uncertainties in simulated impacts increased with CO2 concentrations and associated warming. These impact uncertainties can be reduced by improving temperature and CO2 relationships in models and better quantified through use of multi-model ensembles. Less uncertainty in describing how climate change may affect agricultural productivity will aid adaptation strategy development and policymaking.
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Webber, H., Gaiser, T., Oomen, R., Teixeira, E., Zhao, G., Wallach, D., et al. (2016). Uncertainty in future irrigation water demand and risk of crop failure for maize in Europe. Environ. Res. Lett., .
Abstract: While crop models are widely used to assess the change in crop productivity with climate change, their skill in assessing irrigation water demand or the risk of crop failure in large area impact assessments is relatively unknown. The objective of this study is to investigate which aspects of modeling crop water use (reference crop evapotranspiration (ET0), soil water extraction, soil evaporation, soil water balance and root growth) contributes most to the variability in estimates of maize crop water use and the risk of crop failure, and demonstrate the resulting uncertainty in a climate change impact study for Europe. The SIMPLACE crop modeling framework was used to couple the LINTUL5 crop model in factorial combinations of 2-3 different approaches for simulating the 5 aspects of crop water use, resulting in 51 modeling approaches. Using experiments in France and New Zeland, analysis of total sensitivity revealed that ET0 explained the most variability in both irrigated maize water use and rainfed grain yield levels, with soil evaporation also imporatant in the French experiment. In the European impact study, net irrigation requirement differed by 36% between the Penman and Hargreaves ET0 methods in the baseline period. Average EU grain yields were similar between models, but differences approached 1-2 tonnes in parts of France and Southern Europe. EU wide esimates of crop failure in the historical period ranged between 5.4 years for Priestley-Taylor to every 7.9 years for the Penman ET0 methods. While the uncertainty in absolute values between models was significant, estimates of relative changes were similar between models, confirming the utility of crop models in assessing climate change impacts. If ET0 estimates in crop models can be improved, through the use of appropriate methods, uncertainty in irrigation water demand as well as in yield estimates under drought can be reduced.
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