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De Swaef, T., Bellocchi, G., Aper, J., Lootens, P., & Roldan-Ruiz, I. (2019). Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality. J. Experim. Bot., 70(9), 2587–2604.
Abstract: Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized.
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Fan, F., Henriksen, C. B., & Porter, J. (2016). Valuation of ecosystem services in organic cereal crop production systems with different management practices in relation to organic matter input. Ecosystem Services, 22, 117–127.
Abstract: As the degradation of global ecosystem services (ES) continues in the last five decades, maintaining or even enhancing the ES of agro-ecosystem is one of the approaches to mitigate the global ES loss. This study provides the first estimate of an economic valuation of ES provided by organic cereal crop production systems with different management practices in relation to organic matter input (low, medium and high). Our results show that organic matter inputs significantly affect the total ES value on organic cereal crop production systems. The system with high organic matter input has the highest gross total ES value (US$ 1969 ha(-1) yr(-1)), followed by the low organic matter input system (US$ 1688 ha(-1) yr(-1)), and the lowest ES value are found in the medium organic matter input system (US$ 1492 ha(-1) yr(-1)). Organic matter inputs have strong positive relationship with non-marketable ES values, while this relationship was not found in marketable ES values. Monetizing the ES can be used by land managers and policy makers to adjust management practices in terms of organic matter input in cereal production system with a long term goal for sustainable agriculture.
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Hoffmann, H., Zhao, G., van Bussel, L. G. J., Enders, A., Specka, X., Sosa, C., et al. (2015). Variability of effects of spatial climate data aggregation on regional yield simulation by crop models. Clim. Res., 65, 53–69.
Abstract: Field-scale crop models are often applied at spatial resolutions coarser than that of the arable field. However, little is known about the response of the models to spatially aggregated climate input data and why these responses can differ across models. Depending on the model, regional yield estimates from large-scale simulations may be biased, compared to simulations with high-resolution input data. We evaluated this so-called aggregation effect for 13 crop models for the region of North Rhine-Westphalia in Germany. The models were supplied with climate data of 1 km resolution and spatial aggregates of up to 100 km resolution raster. The models were used with 2 crops (winter wheat and silage maize) and 3 production situations (potential, water-limited and nitrogen-water-limited growth) to improve the understanding of errors in model simulations related to data aggregation and possible interactions with the model structure. The most important climate variables identified in determining the model-specific input data aggregation on simulated yields were mainly related to changes in radiation (wheat) and temperature (maize). Additionally, aggregation effects were systematic, regardless of the extent of the effect. Climate input data aggregation changed the mean simulated regional yield by up to 0.2 t ha(-1), whereas simulated yields from single years and models differed considerably, depending on the data aggregation. This implies that large-scale crop yield simulations are robust against climate data aggregation. However, large-scale simulations can be systematically biased when being evaluated at higher temporal or spatial resolution depending on the model and its parameterization.
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Lardy, R., Bellocchi, G., & Martin, R. (2015). Vuln-Indices: Software to assess vulnerability to climate change. Computers and Electronics in Agriculture, 114, 53–57.
Abstract: Vuln-Indices Java-based software was developed on concepts of vulnerability to climate change of agro-ecological systems. It implements the calculation of vulnerability indices on series of state variables for assessments at both site and region levels. The tool is useful because synthetic indices help capturing complex processes and prove effective to identify the factors responsible for vulnerability and their relative importance. It is suggested that the tool may be plausible for use with stakeholders to disseminate information of climate change impacts. (C) 2015 Elsevier B.V. All rights reserved.
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Dono, G., Cortignani, R., Dell’Unto, D., Deligios, P., Doro, L., Lacetera, N., et al. (2016). Winners and losers from climate change in agriculture: Insights from a case study in the Mediterranean basin. Agricultural Systems, 147, 65–75.
Abstract: The Mediterranean region has always shown a marked inter-annual variability in seasonal weather, creating uncertainty in decisional processes of cultivation and livestock breeding that should not be neglected when modeling farmers’ adaptive responses. This is especially relevant when assessing the impact of climate change (CC), which modifies the atmospheric variability and generates new uncertainty conditions, and the possibility of adaptation of agriculture. Our analysis examines this aspect reconstructing the effects of inter-annual climate variability in a diversified farming district that well represents a wide range of rainfed and irrigated agricultural systems in the Mediterranean area. We used a Regional Atmospheric Modelling System and a weather generator to generate 150 stochastic years of the present and near future climate. Then, we implemented calibrated crop and livestock models to estimate the corresponding productive responses in the form of probability distribution functions (PDFs) under the two climatic conditions. We assumed these PDFs able to represent the expectations of farmers in a discrete stochastic programming (DSP) model that reproduced their economic behaviour under uncertainty conditions. The comparison of the results in the two scenarios provided an assessment of the impact of CC, also taking into account the possibility of adjustment allowed by present technologies and price regimes. The DSP model is built in blocks that represent the farm typologies operating in the study area, each one with its own resource endowment, decisional constraints and economic response. Under this latter aspect, major differences emerged among farm typologies and sub-zones of the study area. A crucial element of differentiation was water availability, since only irrigated C3 crops took full advantage from the fertilization effect of increasing atmospheric CO2 concentration. Rainfed crop production was depressed by the expected reduction of spring rainfall associated to the higher temperatures. So, a dualism emerges between the smaller impact on crop production in the irrigated plain sub-zone, equipped with collective water networks and abundant irrigation resources, and the major negative impact in the hilly area, where these facilities and resources are absent. However intensive dairy farming was also negatively affected in terms of milk production and quality, and cattle mortality because of the increasing summer temperatures. This provides explicit guidance for addressing strategic adaptation policies and for framing farmers’ perception of CC, in order to help them to develop an awareness of the phenomena that are already in progress, which is a prerequisite for effective adaptation responses.
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