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Author |
Van Oosten, M.J.; Sharkhuu, A.; Batelli, G.; Bressan, R.A.; Maggio, A. |
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Title |
The Arabidopsis thaliana mutant air1 implicates SOS3 in the regulation of anthocyanins under salt stress |
Type |
Journal Article |
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Year |
2013 |
Publication |
Plant Molecular Biology |
Abbreviated Journal |
Plant Mol. Biol. |
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Volume |
83 |
Issue |
4-5 |
Pages |
405-415 |
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Keywords |
Anthocyanins/analysis/*metabolism; Arabidopsis/drug effects/*genetics/physiology/radiation effects; Arabidopsis Proteins/*genetics/metabolism; Basic-Leucine Zipper Transcription Factors/*genetics/metabolism; Flavonoids/metabolism; *Gene Expression Regulation, Plant; Light; Mutagenesis, Insertional; Phenotype; Plant Roots/drug effects/genetics/physiology/radiation effects; Plant Shoots/drug effects/genetics/physiology/radiation effects; Real-Time Polymerase Chain Reaction; Sodium Chloride/pharmacology; Stress, Physiological |
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Abstract |
The accumulation of anthocyanins in plants exposed to salt stress has been largely documented. However, the functional link and regulatory components underlying the biosynthesis of these molecules during exposure to stress are largely unknown. In a screen of second site suppressors of the salt overly sensitive3-1 (sos3-1) mutant, we isolated the anthocyanin-impaired-response-1 (air1) mutant. air1 is unable to accumulate anthocyanins under salt stress, a key phenotype of sos3-1 under high NaCl levels (120 mM). The air1 mutant showed a defect in anthocyanin production in response to salt stress but not to other stresses such as high light, low phosphorous, high temperature or drought stress. This specificity indicated that air1 mutation did not affect anthocyanin biosynthesis but rather its regulation in response to salt stress. Analysis of this mutant revealed a T-DNA insertion at the first exon of an Arabidopsis thaliana gene encoding for a basic region-leucine zipper transcription factor. air1 mutants displayed higher survival rates compared to wild-type in oxidative stress conditions, and presented an altered expression of anthocyanin biosynthetic genes such as F3H, F3’H and LDOX in salt stress conditions. The results presented here indicate that AIR1 is involved in the regulation of various steps of the flavonoid and anthocyanin accumulation pathways and is itself regulated by the salt-stress response signalling machinery. The discovery and characterization of AIR1 opens avenues to dissect the connections between abiotic stress and accumulation of antioxidants in the form of flavonoids and anthocyanins. |
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English |
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0167-4412 1573-5028 |
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CropM |
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MA @ admin @ |
Serial  |
4616 |
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Author |
Challinor, A.J.; Smith, M.S.; Thornton, P. |
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Title |
Use of agro-climate ensembles for quantifying uncertainty and informing adaptation |
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Journal Article |
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Year |
2013 |
Publication |
Agricultural and Forest Meteorology |
Abbreviated Journal |
Agricultural and Forest Meteorology |
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Volume |
170 |
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Pages |
2-7 |
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Keywords |
Climate models; Crop models; Ensembles; Climate change; Adaptation; Food security; Climate variability; Uncertainty; Crop yield |
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Abstract |
► Introduces the special issue on Agricultural prediction using climate model ensembles. ► Discuss remaining scientific challenges. ► Develops distinction between projection- and utility-based ensemble modelling. ► Recommendations made RE modelling and the analysis and reporting of uncertainty. Significant progress has been made in the use of ensemble agricultural and climate modelling, and observed data, to project future productivity and to develop adaptation options. An increasing number of agricultural models are designed specifically for use with climate ensembles, and improved methods to quantify uncertainty in both climate and agriculture have been developed. Whilst crop–climate relationships are still the most common agricultural study of this sort, on-farm management, hydrology, pests, diseases and livestock are now also examined. This paper introduces all of these areas of progress, with more detail being found in the subsequent papers in the special issue. Remaining scientific challenges are discussed, and a distinction is developed between projection- and utility-based approaches to agro-climate ensemble modelling. Recommendations are made regarding the manner in which uncertainty is analysed and reported, and the way in which models and data are used to make inferences regarding the future. A key underlying principle is the use of models as tools from which information is extracted, rather than as competing attempts to represent reality. |
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2015-09-23 |
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0168-1923 |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4690 |
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Balkovič, J.; van der Velde, M.; Schmid, E.; Skalský, R.; Khabarov, N.; Obersteiner, M.; Stürmer, B.; Xiong, W. |
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Title |
Pan-European crop modelling with EPIC: Implementation, up-scaling and regional crop yield validation |
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Journal Article |
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Year |
2013 |
Publication |
Agricultural Systems |
Abbreviated Journal |
Agricultural Systems |
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120 |
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Pages |
61-75 |
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EPIC; large-scale crop modelling; model performance testing; EU; climate-change; high-resolution; organic-carbon; growth-model; wheat yield; water; calibration; impacts; productivity; simulations |
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Justifiable usage of large-scale crop model simulations requires transparent, comprehensive and spatially extensive evaluations of their performance and associated accuracy. Simulated crop yields of a Pan-European implementation of the Environmental Policy Integrated Climate (EPIC) crop model were satisfactorily evaluated with reported regional yield data from EUROSTAT for four major crops, including winter wheat, rainfed and irrigated maize, spring barley and winter rye. European-wide land use, elevation, soil and daily meteorological gridded data were integrated in GIS and coupled with EPIC. Default EPIC crop and biophysical process parameter values were used with some minor adjustments according to suggestions from scientific literature. The model performance was improved by spatial calculations of crop sowing densities, potential heat units, operation schedules, and nutrient application rates. EPIC performed reasonable in the simulation of regional crop yields, with long-term averages predicted better than inter-annual variability: linear regression R-2 ranged from 0.58 (maize) to 0.91 (spring barley) and relative estimation errors were between +/- 30% for most of the European regions. The modelled and reported crop yields demonstrated similar responses to driving meteorological variables. However, EPIC performed better in dry compared to wet years. A yield sensitivity analysis of crop nutrient and irrigation management factors and cultivar specific characteristics for contrasting regions in Europe revealed a range in model response and attainable yields. We also show that modelled crop yield is strongly dependent on the chosen PET method. The simulated crop yield variability was lower compared to reported crop yields. This assessment should contribute to the availability of harmonised and transparently evaluated agricultural modelling tools in the EU as well as the establishment of modelling benchmarks as a requirement for sound and ongoing policy evaluations in the agricultural and environmental domains. (C) 2013 The Authors. Published by Elsevier Ltd. All rights reserved. |
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2016-06-01 |
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0308-521x |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4737 |
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Author |
Del Prado, A.; Crosson, P.; Olesen, J.E.; Rotz, C.A. |
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Title |
Whole-farm models to quantify greenhouse gas emissions and their potential use for linking climate change mitigation and adaptation in temperate grassland ruminant-based farming systems |
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Journal Article |
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Year |
2013 |
Publication |
Animal |
Abbreviated Journal |
Animal |
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Volume |
7 Suppl 2 |
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Pages |
373-385 |
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Abstract |
The farm level is the most appropriate scale for evaluating options for mitigating greenhouse gas (GHG) emissions, because the farm represents the unit at which management decisions in livestock production are made. To date, a number of whole farm modelling approaches have been developed to quantify GHG emissions and explore climate change mitigation strategies for livestock systems. This paper analyses the limitations and strengths of the different existing approaches for modelling GHG mitigation by considering basic model structures, approaches for simulating GHG emissions from various farm components and the sensitivity of GHG outputs and mitigation measures to different approaches. Potential challenges for linking existing models with the simulation of impacts and adaptation measures under climate change are explored along with a brief discussion of the effects on other ecosystem services. |
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ISSN |
1751-7311 |
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LiveM |
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MA @ admin @ |
Serial |
4765 |
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Author |
Elliott, J.; Deryng, D.; Müller, C.; Frieler, K.; Konzmann, M.; Gerten, D.; Glotter, M.; Flörke, M.; Wada, Y.; Best, N.; Eisner, S.; Fekete, B.M.; Folberth, C.; Foster, I.; Gosling, S.N.; Haddeland, I.; Khabarov, N.; Ludwig, F.; Masaki, Y.; Olin, S.; Rosenzweig, C.; Ruane, A.C.; Satoh, Y.; Schmid, E.; Stacke, T.; Tang, Q.; Wisser, D. |
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Title |
Constraints and potentials of future irrigation water availability on agricultural production under climate change |
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Journal Article |
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Year |
2013 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U. S. A. |
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Volume |
111 |
Issue |
9 |
Pages |
3239-3244 |
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Keywords |
Agricultural Irrigation/economics/*methods; Agriculture/economics/*methods; Carbon Dioxide/analysis; *Climate Change; Computer Simulation; Forecasting; *Models, Theoretical; Water Supply/*statistics & numerical data; adaptation; agriculture; hydrology; uncertainty |
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Abstract |
We compare ensembles of water supply and demand projections from 10 global hydrological models and six global gridded crop models. These are produced as part of the Inter-Sectoral Impacts Model Intercomparison Project, with coordination from the Agricultural Model Intercomparison and Improvement Project, and driven by outputs of general circulation models run under representative concentration pathway 8.5 as part of the Fifth Coupled Model Intercomparison Project. Models project that direct climate impacts to maize, soybean, wheat, and rice involve losses of 400-1,400 Pcal (8-24% of present-day total) when CO2 fertilization effects are accounted for or 1,400-2,600 Pcal (24-43%) otherwise. Freshwater limitations in some irrigated regions (western United States; China; and West, South, and Central Asia) could necessitate the reversion of 20-60 Mha of cropland from irrigated to rainfed management by end-of-century, and a further loss of 600-2,900 Pcal of food production. In other regions (northern/eastern United States, parts of South America, much of Europe, and South East Asia) surplus water supply could in principle support a net increase in irrigation, although substantial investments in irrigation infrastructure would be required. |
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2016-10-31 |
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English |
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ISSN |
0027-8424 1091-6490 |
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CropM |
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Call Number |
MA @ admin @ |
Serial |
4790 |
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