|
Ben Touhami, H., & Bellocchi, G. (2015). Bayesian calibration of the Pasture Simulation model (PaSim) to simulate European grasslands under water stress. Ecological Informatics, 30, 356–364.
Abstract: As modeling becomes a more widespread practice in the agro-environmental sciences, scientists need reliable tools to calibrate models against ever more complex and detailed data. We present a generic Bayesian computation framework for grassland simulation, which enables parameter estimation in the Bayesian formalism by using Monte Carlo approaches. We outline the underlying rationale, discuss the computational issues, and provide results from an application of the Pasture Simulation model (PaSim) to three European grasslands. The framework was suited to investigate the challenging problem of calibrating complex biophysical models to data from altered scenarios generated by precipitation reduction (water stress conditions). It was used to infer the parameters of manipulated grassland systems and to assess the gain in uncertainty reduction by updating parameter distributions using measurements of the output variables.
|
|
|
Ma, S., Lardy, R., Graux, A. - I., Ben Touhami, H., Klumpp, K., Martin, R., et al. (2015). Regional-scale analysis of carbon and water cycles on managed grassland systems. Env. Model. Softw., 72, 356–371.
Abstract: Predicting regional and global carbon (C) and water dynamics on grasslands has become of major interest, as grasslands are one of the most widespread vegetation types worldwide, providing a number of ecosystem services (such as forage production and C storage). The present study is a contribution to a regional-scale analysis of the C and water cycles on managed grasslands. The mechanistic biogeochemical model PaSim (Pasture Simulation model) was evaluated at 12 grassland sites in Europe. A new parameterization was obtained on a common set of eco-physiological parameters, which represented an improvement of previous parameterization schemes (essentially obtained via calibration at specific sites). We found that C and water fluxes estimated with the parameter set are in good agreement with observations. The model with the new parameters estimated that European grassland are a sink of C with 213 g C m(-2) yr(-1), which is close to the observed net ecosystem exchange (NEE) flux of the studied sites (185 g C m(-2) yr(-1) on average). The estimated yearly average gross primary productivity (GPP) and ecosystem respiration (RECO) for all of the study sites are 1220 and 1006 g C m(-2) yr(-1), respectively, in agreement with observed average GPP (1230 g C m(-2) yr(-1)) and RECO (1046 g C m(-2) yr(-1)). For both variables aggregated on a weekly basis, the root mean square error (RMSE) was similar to 5-16 g C week(-1) across the study sites, while the goodness of fit (R-2) was similar to 0.4-0.9. For evapotranspiration (ET), the average value of simulated ET (415 mmyr(-1)) for all sites and years is close to the average value of the observed ET (451 mm yr(-1)) by flux towers (on a weekly basis, RMSE similar to 2-8 mm week(-1); R-2 = 0.3-0.9). However, further model development is needed to better represent soil water dynamics under dry conditions and soil temperature in winter. A quantification of the uncertainties introduced by spatially generalized parameter values in C and water exchange estimates is also necessary. In addition, some uncertainties in the input management data call for the need to improve the quality of the observational system.
|
|
|
Sánchez, B., Rasmussen, A., & Porter, J. R. (2014). Temperatures and the growth and development of maize and rice: a review. Glob. Chang. Biol., 20(2), 408–417.
Abstract: Because of global land surface warming, extreme temperature events are expected to occur more often and more intensely, affecting the growth and development of the major cereal crops in several ways, thus affecting the production component of food security. In this study, we have identified rice and maize crop responses to temperature in different, but consistent, phenological phases and development stages. A literature review and data compilation of around 140 scientific articles have determined the key temperature thresholds and response to extreme temperature effects for rice and maize, complementing an earlier study on wheat. Lethal temperatures and cardinal temperatures, together with error estimates, have been identified for phenological phases and development stages. Following the methodology of previous work, we have collected and statistically analysed temperature thresholds of the three crops for the key physiological processes such as leaf initiation, shoot growth and root growth and for the most susceptible phenological phases such as sowing to emergence, anthesis and grain filling. Our summary shows that cardinal temperatures are conservative between studies and are seemingly well defined in all three crops. Anthesis and ripening are the most sensitive temperature stages in rice as well as in wheat and maize. We call for further experimental studies of the effects of transgressing threshold temperatures so such responses can be included into crop impact and adaptation models.
|
|
|
Moriondo, M., Ferrise, R., Trombi, G., Brilli, L., Dibari, C., & Bindi, M. (2015). Modelling olive trees and grapevines in a changing climate. Env. Model. Softw., 72, 387–401.
Abstract: The models developed for simulating olive tree and grapevine yields were reviewed by focussing on the major limitations of these models for their application in a changing climate. Empirical models, which exploit the statistical relationship between climate and yield, and process based models, where crop behaviour is defined by a range of relationships describing the main plant processes, were considered. The results highlighted that the application of empirical models to future climatic conditions (i.e. future climate scenarios) is unreliable since important statistical approaches and predictors are still lacking. While process-based models have the potential for application in climate-change impact assessments, our analysis demonstrated how the simulation of many processes affected by warmer and CO2-enriched conditions may give rise to important biases. Conversely, some crop model improvements could be applied at this stage since specific sub-models accounting for the effect of elevated temperatures and CO2 concentration were already developed. (C) 2014 Elsevier Ltd. All rights reserved.
|
|
|
Challinor, A. J., Smith, M. S., & Thornton, P. (2013). Use of agro-climate ensembles for quantifying uncertainty and informing adaptation. Agricultural and Forest Meteorology, 170, 2–7.
Abstract: ► Introduces the special issue on Agricultural prediction using climate model ensembles. ► Discuss remaining scientific challenges. ► Develops distinction between projection- and utility-based ensemble modelling. ► Recommendations made RE modelling and the analysis and reporting of uncertainty. Significant progress has been made in the use of ensemble agricultural and climate modelling, and observed data, to project future productivity and to develop adaptation options. An increasing number of agricultural models are designed specifically for use with climate ensembles, and improved methods to quantify uncertainty in both climate and agriculture have been developed. Whilst crop–climate relationships are still the most common agricultural study of this sort, on-farm management, hydrology, pests, diseases and livestock are now also examined. This paper introduces all of these areas of progress, with more detail being found in the subsequent papers in the special issue. Remaining scientific challenges are discussed, and a distinction is developed between projection- and utility-based approaches to agro-climate ensemble modelling. Recommendations are made regarding the manner in which uncertainty is analysed and reported, and the way in which models and data are used to make inferences regarding the future. A key underlying principle is the use of models as tools from which information is extracted, rather than as competing attempts to represent reality.
|
|