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De Swaef, T., Bellocchi, G., Aper, J., Lootens, P., & Roldan-Ruiz, I. (2019). Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality. J. Experim. Bot., 70(9), 2587–2604.
Abstract: Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized.
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Kim, Y., Berger, S., Kettering, J., Tenhunen, J., Haas, E., & Kiese, R. (2014). Simulation of N2O emissions and nitrate leaching from plastic mulch radish cultivation with LandscapeDNDC. Ecol. Res., 29(3), 441–454.
Abstract: Radish is one of the major dry field crops in Asia commonly grown with plastic mulch and high rates of N fertilization, and potentially harming the environment due to N2O emissions and nitrate leaching. Despite the widespread use of plastic mulch, biogeochemical models so far do not yet consider impacts of mulch on soil environmental conditions and biogeochemistry. In this study, we adapted and successfully tested the LandscapeDNDC model against field data by simulating crop growth, C and N turnover and associated N2O emissions as well as nitrate leaching for radish cultivation with plastic mulch and in conjunction with different rates of N fertilization (465-765 kg N ha(-1) year(-1)). Due to the sandy soil texture and monsoon climate, nitrate leaching with rates up to 350 kg N ha(-1) year(-1) was the dominant reason for overall low nitrogen use efficiency (32-43 %). Direct or indirect N2O emissions (calculated from simulated nitrate leaching rates and IPCC EFind = 0.0075) ranged between 2 and 3 kg N ha(-1) year(-1), thus contributing an equal amount to total field emissions of about 5 kg N ha(-1) year(-1). Based on our results, emission factors for direct N2O emissions ranged between 0.004 and 0.005. These values are only half of the IPCC default value (0.01), demonstrating the need of biogeochemical models for developing site and/or region specific EFs. Simulation results also revealed that changes in agricultural management by applying the fertilizer only to the rows would be an efficient mitigation strategy, effectively decreasing field nitrate leaching and N2O emissions by 50-60 %.
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Grosz, B., Dechow, R., Gebbert, S., Hoffmann, H., Zhao, G., Constantin, J., et al. (2017). The implication of input data aggregation on up-scaling soil organic carbon changes. Env. Model. Softw., 96, 361–377.
Abstract: In up-scaling studies, model input data aggregation is a common method to cope with deficient data availability and limit the computational effort. We analyzed model errors due to soil data aggregation for modeled SOC trends. For a region in North West Germany, gridded soil data of spatial resolutions between 1 km and 100 km has been derived by majority selection. This data was used to simulate changes in SOC for a period of 30 years by 7 biogeochemical models. Soil data aggregation strongly affected modeled SOC trends. Prediction errors of simulated SOC changes decreased with increasing spatial resolution of model output. Output data aggregation only marginally reduced differences of model outputs between models indicating that errors caused by deficient model structure are likely to persist even if requirements on the spatial resolution of model outputs are low. (C)2017 Elsevier Ltd. All rights reserved.
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Jayet, P., & Petsakos, A. (2013). Evaluating the efficiency of a uniform N-input tax under different policy scenarios at different scales. Environmental Modelling & Assessment, 18(1), 57–72.
Abstract: Nitrate pollution from agriculture is an important environmental externality, caused by the excessive use of fertilizers. The internalization of this problem, via a tax on mineral nitrogen, could lead to a second best solution, reducing nitrate emissions. Several authors suggest that a reduction in agricultural support could produce similar results. In this paper, we examine the effects of different levels of a uniformly implemented nitrogen tax in France under two policy scenarios, corresponding to post Agenda 2000 and 2003 Luxembourg reforms of European Union ’ s Common Agricultural Policy, in order to reveal the synergies and conflicts between the tax and the policy scenarios in terms of nitrate emissions abatement. The analysis is performed at different geographical scales, from the national to the regional and is based on a bioeconomic approach that involves the coupling of the economic model AROPAj with the crop model STICS. Results show that the efficiency of the N-tax varies according to the geographical scale of the analysis and the type of farming. Furthermore, we prove that a uniform implementation may lead to perverse effects that should always be taken into account when introducing second-best instruments.
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Popp, A., Rose, S. K., Calvin, K., Van Vuuren, D. P., Dietrich, J. P., Wise, M., et al. (2014). Land-use transition for bioenergy and climate stabilization: model comparison of drivers, impacts and interactions with other land use based mitigation options. Clim. Change, 123(3-4), 495–509.
Abstract: In this article, we evaluate and compare results from three integrated assessment models (GCAM, IMAGE, and ReMIND/MAgPIE) regarding the drivers and impacts of bioenergy production on the global land system. The considered model frameworks employ linked energy, economy, climate and land use modules. By the help of these linkages the direct competition of bioenergy with other energy technology options for greenhouse gas (GHG) mitigation, based on economic costs and GHG emissions from bioenergy production, has been taken into account. Our results indicate that dedicated bioenergy crops and biomass residues form a potentially important and cost-effective input into the energy system. At the same time, however, the results differ strongly in terms of deployment rates, feedstock composition and land-use and greenhouse gas implications. The current paper adds to earlier work by specific looking into model differences with respect to the land-use component that could contribute to the noted differences in results, including land cover allocation, land use constraints, energy crop yields, and non-bioenergy land mitigation options modeled. In scenarios without climate change mitigation, bioenergy cropland represents 10-18 % of total cropland by 2100 across the different models, and boosts cropland expansion at the expense of carbon richer ecosystems. Therefore, associated emissions from land-use change and agricultural intensification as a result of bio-energy use range from 14 and 113 Gt CO2-eq cumulatively through 2100. Under climate policy, bioenergy cropland increases to 24-36 % of total cropland by 2100.
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