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Author |
Dumont, B.; Leemans, V.; Mansouri, M.; Bodson, B.; Destain, J.-P.; Destain, M.-F. |
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Title |
Parameter identification of the STICS crop model, using an accelerated formal MCMC approach |
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Journal Article |
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Year |
2014 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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Volume |
52 |
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Pages |
121-135 |
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Keywords |
crop model; parameter estimation; bayes; stics; dream; global sensitivity-analysis; simulation-model; nitrogen balances; bayesian-approach; generic model; wheat; prediction; water; optimization; algorithm |
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Abstract |
This study presents a Bayesian approach for the parameters’ identification of the STICS crop model based on the recently developed Differential Evolution Adaptive Metropolis (DREAM) algorithm. The posterior distributions of nine specific crop parameters of the STICS model were sampled with the aim to improve the growth simulations of a winter wheat (Triticum aestivum L) culture. The results obtained with the DREAM algorithm were initially compared to those obtained with a Nelder-Mead Simplex algorithm embedded within the OptimiSTICS package. Then, three types of likelihood functions implemented within the DREAM algorithm were compared, namely the standard least square, the weighted least square, and a transformed likelihood function that makes explicit use of the coefficient of variation (CV). The results showed that the proposed CV likelihood function allowed taking into account both noise on measurements and heteroscedasticity which are regularly encountered in crop modelling. (C) 2013 Elsevier Ltd. All rights reserved. |
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1364-8152 |
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CropM |
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Call Number |
MA @ admin @ |
Serial |
4520 |
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Author |
Vilvert, E.; Lana, M.; Zander, P.; Sieber, S. |
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Title |
Multi-model approach for assessing the sunflower food value chain in Tanzania |
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Journal Article |
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Year |
2018 |
Publication |
Agricultural Systems |
Abbreviated Journal |
Agric. Syst. |
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Volume |
159 |
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Pages |
103-110 |
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Keywords |
Sunflower; Food value chain; Modelling; Tanzania; Food security; Systems Simulation; Crop Model; Agricultural Systems; Farming Systems; Yield Response; Land-Use; Water; Aquacrop; Security; Stics |
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Abstract |
Sunflower is one of the major oilseeds produced in Tanzania, but due to insufficient domestic production more than half of the country’s demand is imported. The improvement of the sunflower food value chain (FVC) understanding is important to ensure an increase in the production, availability, and quality of edible oil. In order to analyse causes and propose solutions to increase the production of sunflower oil, a conceptual framework that proposes the combined use of different models to provide insights about the sunflower FVC was developed. This research focus on the identification of agricultural models that can provide a better understanding of the sunflower FVC in Tanzania, especially within the context of food security improvement. A FVC scheme was designed considering the main steps of sunflower production. Thereafter, relevant models were selected and placed along each step of the FVC. As result, the sunflower FVC model in Tanzania is organized in five steps, namely (1) natural resources; (2) crop production; (3) oil processing; (4) trade; and (5) consumption. Step 1 uses environmental indicators to analyse soil parameters on soil-water models (SWAT, LPJmL, APSIM or CroSyst), with outputs providing data for step 2 of the FVC. In the production step, data from step 1, together with other inputs, is used to run crop models (DSSAT, HERMES, MONICA, STICS, EPIC or AquaCrop) that analyse the impact on sunflower yields. Thereafter, outputs from crop models serve as input for bio-economic farm models (FSSIM or MODAM) to estimate production costs and farm income by optimizing resource allocation planning for step 2. In addition, outputs from crop models are used as inputs for macro-economic models (GTAP, MAGNET or MagPie) by adjusting supply functions and environmental impacts within steps 3, 4, and 5. These models simulate supply and demand, including the processing of products to determine prices and trade volumes at market equilibrium. In turn, these data is used by bio-economic farm models to assess sunflower returns for different farm types and agro-environmental conditions. Due to the large variety of models, it is possible to assess significant parts of the FVC, reducing the need to make assumptions, while improving the understanding of the FVC. |
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2018-01-25 |
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0308-521x |
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CropM, TradeM, ft_macsur |
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MA @ admin @ |
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5187 |
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Author |
Korhonen, P.; Palosuo, T.; Persson, T.; Höglind, M.; Jego, G.; Van Oijen, M.; Gustavsson, A.-M.; Belanger, G.; Virkajärvi, P. |
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Title |
Modelling grass yields in northern climates – a comparison of three growth models for timothy |
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Journal Article |
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Year |
2018 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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Volume |
224 |
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Pages |
37-47 |
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Keywords |
Forage grass; Model comparison; Timothy; Uncertainty; Yield; Nutritive-Value; Catimo Model; Nitrogen Balances; Simulation; Regrowth; Wheat; Stics; Dynamics; Harvest; Water |
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Abstract |
During the past few years, several studies have compared the performance of crop simulation models to assess the uncertainties in model-based climate change impact assessments and other modelling studies. Many of these studies have concentrated on cereal crops, while fewer model comparisons have been conducted for grasses. We compared the predictions for timothy grass (Phleum pratertse L.) yields for first and second cuts along with the dynamics of above-ground biomass for the grass simulation models BASGRA and CATIMO, and the soil -crop model STICS. The models were calibrated and evaluated using field data from seven sites across Northern Europe and Canada with different climates, soil conditions and management practices. Altogether the models were compared using data on timothy grass from 33 combinations of sites, cultivars and management regimes. Model performances with two calibration approaches, cultivar-specific and generic calibrations, were compared. All the models studied estimated the dynamics of above-ground biomass and the leaf area index satisfactorily, but tended to underestimate the first cut yield. Cultivar-specific calibration resulted in more accurate first cut yield predictions than the generic calibration achieving root mean square errors approximately one third lower for the cultivar-specific calibration. For the second cut, the difference between the calibration methods was small. The results indicate that detailed soil process descriptions improved the overall model performance and the model responses to management, such as nitrogen applications. The results also suggest that taking the genetic variability into account between cultivars of timothy grass also improves the yield estimates. Calibrations using both spring and summer growth data simultaneously revealed that processes determining the growth in these two periods require further attention in model development. |
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2018-07-12 |
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0378-4290 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
5206 |
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Author |
Sollitto, D.; De Benedetto, D.; Castrignanò, A.; Crescimanno, G.; Provenzano, G.; Ventrella, D. |
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Title |
Spatial data fusion and analysis for soil characterization: a case study in a coastal basin of south-western Sicily (southern Italy) |
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Journal Article |
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Year |
2012 |
Publication |
Italian Journal of Agronomy |
Abbreviated Journal |
Ital. J. Agron. |
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Volume |
7 |
Issue |
1 |
Pages |
4 |
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Keywords |
salinization risk; soil retention curve; geostatistics; factor Kriging; intrinsic random funciton |
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Abstract |
Salinization is one of the most serious problems confronting sustainable agriculture in semi-arid and arid regions. Accurate mapping of soil salinization and the associated risk represent a fundamental step in planning agricultural and remediation activities. Geostatistical analysis is very useful for soil quality assessment because it makes it possible to determine the spatial relationships between selected variables and to produce synthetic maps of spatial variation. The main objective of this paper was to map the soil salinization risk in the Delia-Nivolelli alluvial basin (south-western Sicily, southern Italy), using multivariate geostatistical techniques and a set of topographical, physical and soil hydraulic properties. Elevation data were collected from existing topographic maps and analysed preliminarily to improve the estimate precision of sparsely sampled primary variables. For interpolation multi-collocated cokriging was applied to the dataset, including textural and hydraulic properties and electrical conductivity measurements carried out on 128 collected soil samples, using elevation data as auxiliary variable. Spatial dependence among elevation and physical soil properties was explored with factorial kriging analysis (FKA) that could isolate and display the sources of variation acting at different spatial scales. FKA isolated significant regionalised factors which give a concise description of the complex soil physical variability at the different selected spatial scales. These factors mapped, allowed the delineation of zones at different salinisation risk to be managed separately to control and prevent salinization risk. The proposed methodology could be a valid support for land use and soil remediation planning at regional scale. |
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2039-6805 1125-4718 |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4595 |
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Author |
Vitali, A.; Lana, E.; Amadori, M.; Bernabucci, U.; Nardone, A.; Lacetera, N. |
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Title |
Analysis of factors associated with mortality of heavy slaughter pigs during transport and lairage |
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Journal Article |
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Year |
2014 |
Publication |
Journal of Animal Science |
Abbreviated Journal |
J. Anim. Sci. |
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Volume |
92 |
Issue |
11 |
Pages |
5134-5141 |
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Keywords |
Abattoirs/*statistics & numerical data; Animals; *Data Interpretation, Statistical; Humidity/adverse effects; Light/adverse effects; *Mortality; Retrospective Studies; Seasons; Swine/*physiology; Temperature; Time Factors; Transportation/*statistics & numerical data; lairage; mortality; pigs; temperature-humidity index; transport |
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The study was based on data collected during 5 yr (2003-2007) and was aimed at assessing the effects of the month, slaughter house of destination (differing for stocking density, openings, brightness, and cooling device types), length of the journey, and temperature-humidity index (THI) on mortality of heavy slaughter pigs (approximately 160 kg live weight) during transport and lairage. Data were obtained from 24,098 journeys and 3,676,153 pigs transported from 1,618 farms to 3 slaughter houses. Individual shipments were the unit of observation. The terms dead on arrival (DOA) and dead in pen (DIP) refer to pigs that died during transport and in lairage at the abattoir before slaughtering, respectively. These 2 variables were assessed as the dependent counts in separate univariate Poisson regressions. The independent variables assessed univariately in each set of regressions were month of shipment, slaughter house of destination, time traveled, and each combination of the month with the time traveled. Two separate piecewise regressions were done. One used DOA counts within THI levels over pigs transported as a dependent ratio and the second used DIP counts within THI levels over pigs from a transport kept in lairage as a dependent ratio. The THI was the sole independent variable in each case. The month with the greatest frequency of deaths was July with a risk ratio of 1.22 (confidence interval: 1.06-1.36; P < 0.05) and 1.27 (confidence interval: 1.06-1.51; P < 0.05) for DOA and DIP, respectively. The lower mortality risk ratios for DOA and DIP were recorded for January and March (P < 0.05). The aggregated data of the summer (June, July, and August) versus non-summer (January, March, September, and November) months showed a greater risk of pigs dying during the hot season when considering both transport and lairage (P < 0.05). The mortality risk ratio of DIP was lower at the slaughter house with the lowest stocking density (0.64 m(2)/100 kg live weight), large open windows on the roof and sidewalls, low brightness (40 lx) lights, and high-pressure sprinklers as cooling devices. The mortality risk ratio of DOA increased significantly for journeys longer than 2 h, whereas no relationship was found between length of transport and DIP. The piecewise analysis pointed out that 78.5 and 73.6 THI were the thresholds above which the mortality rate increased significantly for DOA and DIP, respectively. These results may help the pig industry to improve the welfare of heavy slaughter pigs during transport and lairage. |
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1525-3163 (Electronic) 0021-8812 (Linking) |
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LiveM, ft_macsur |
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MA @ admin @ |
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4641 |
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