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De Swaef, T., Bellocchi, G., Aper, J., Lootens, P., & Roldan-Ruiz, I. (2019). Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality. J. Experim. Bot., 70(9), 2587–2604.
Abstract: Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized.
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Bai, H., & Tao, F. (2017). Sustainable intensification options to improve yield potential and ecoefficiency for rice-wheat rotation system in China. Field Crops Research, 211, 89–105.
Abstract: Agricultural production systems are facing the challenges of increasing food production while reducing environmental cost, particularly in China. To improve yield potential and eco-efficiency simultaneously for the rice-wheat rotation system in China, we investigated changes in potential yields and yield gaps based on the field experiment data from 1981 to 2009 at four representative agro-meteorological experiment stations, along with the Agricultural Production System Simulator (APSIM) rice-wheat model. We further optimized crop cultivar and sowing/transplanting date, and investigated crop yield, water and nitrogen use efficiency, and environment impact of the rice-wheat rotation system in response to water and nitrogen supply. We found that the yield gaps between potential yields and farmer’s yields were about 8101 kg/ha or 45.3% of the potential yield, which had been shrinking from 1981 to 2009. To improve yield potentials and eco-efficiency, the cultivars of rice and wheat that properly increase both radiation use efficiency and grain weight are promising. Rice cultivars breeding need to maintain the length of panicle development and reproductive phase. High-yielding wheat cultivars are characterized by medium vernalization sensitivity, low photoperiod sensitivity and short length of floral initiation phase. Proper shift in sowing date can alleviate the negative effect of climate risk. Intermittent irrigation scheme (irrigate until surface soil saturated when average water content of surface soil is < 50% of saturated water content) for rice, together with nitrogen application rate of 390-420 kg N/ha (180-210 kg N/ha for rice and 210 kg N/ha for wheat), is suggested for the rice-wheat rotation system to maintain high yield with high resource use efficiency. This suggested nitrogen application rates are lower than those currently used by many local farmers. Our findings are useful to improve yield potential and eco-efficiency for the rice-wheat rotation system in China. Furthermore, this study demonstrates an effective approach with crop modelling to design fanning system for sustainable intensification, which can be adapted to other farming systems and regions.
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Nelson, G. C., Valin, H., Sands, R. D., Havlík, P., Ahammad, H., Deryng, D., et al. (2014). Climate change effects on agriculture: economic responses to biophysical shocks. Proc. Natl. Acad. Sci. U. S. A., 111(9), 3274–3279.
Abstract: Agricultural production is sensitive to weather and thus directly affected by climate change. Plausible estimates of these climate change impacts require combined use of climate, crop, and economic models. Results from previous studies vary substantially due to differences in models, scenarios, and data. This paper is part of a collective effort to systematically integrate these three types of models. We focus on the economic component of the assessment, investigating how nine global economic models of agriculture represent endogenous responses to seven standardized climate change scenarios produced by two climate and five crop models. These responses include adjustments in yields, area, consumption, and international trade. We apply biophysical shocks derived from the Intergovernmental Panel on Climate Change’s representative concentration pathway with end-of-century radiative forcing of 8.5 W/m(2). The mean biophysical yield effect with no incremental CO2 fertilization is a 17% reduction globally by 2050 relative to a scenario with unchanging climate. Endogenous economic responses reduce yield loss to 11%, increase area of major crops by 11%, and reduce consumption by 3%. Agricultural production, cropland area, trade, and prices show the greatest degree of variability in response to climate change, and consumption the lowest. The sources of these differences include model structure and specification; in particular, model assumptions about ease of land use conversion, intensification, and trade. This study identifies where models disagree on the relative responses to climate shocks and highlights research activities needed to improve the representation of agricultural adaptation responses to climate change.
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Lehtonen, H. (2015). Evaluating adaptation and the production development of Finnish agriculture in climate and global change. Agricultural and Food Science, 24(3), 219–234.
Abstract: Agricultural product prices and policies influence the development of crop yields under climate change through farm level management decisions. On this basis, five main scenarios were specified for agricultural commodity prices and crop yields. An economic agricultural sector model was used in order to assess the impacts of the scenarios on production, land use and farm income in Finland. The results suggest that falling crop yields, if realized due to low prices and restrictive policies, will result in decreasing crop and livestock production and increasing nutrient surplus. Slowly increasing crop yields could stabilise production and increase farm income. Significantly higher crop prices and yields are required, however, for any marked increase in production in Finland. Cereals production would increase relatively more than livestock production, if there were high prices for agricultural products. This is explained by abundant land resources, a high opportunity cost of labour and policies maintaining current dairy and beef production.
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Liu, X., Lehtonen, H., Purola, T., Pavlova, Y., Rötter, R., & Palosuo, T. (2016). Dynamic economic modelling of crop rotations with farm management practices under future pest pressure. Agricultural Systems, 144, 65–76.
Abstract: Agricultural practice is facing multiple challenges under volatile commodity markets, inevitable climate change, mounting pest pressure and various other environment-related constraints. The objective of this research is to present a dynamic optimization model of crop rotations and farm management and show its suitability for economic analysis over a 30 year time period. In this model, we include management practices such as fertilization, fungicide treatment and liming, and apply it in a region in Southwestern Finland. Results show that (i) growing pest pressure favours the cultivation of wheat-oats and wheat-oilseeds combinations, while (ii) market prices largely determine the crops in the rotation plan and the specific management practices adopted. The flexibility of our model can also be utilized in evaluating the value of other management options such as new cultivars under different projections of future climate and market conditions.
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