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Wallach, D., Mearns, L. O., Ruane, A. C., Rötter, R. P., & Asseng, S. (2016). Lessons from climate modeling on the design and use of ensembles for crop modeling. Clim. Change, 139(3-4), 551–564.
Abstract: Working with ensembles of crop models is a recent but important development in crop modeling which promises to lead to better uncertainty estimates for model projections and predictions, better predictions using the ensemble mean or median, and closer collaboration within the modeling community. There are numerous open questions about the best way to create and analyze such ensembles. Much can be learned from the field of climate modeling, given its much longer experience with ensembles. We draw on that experience to identify questions and make propositions that should help make ensemble modeling with crop models more rigorous and informative. The propositions include defining criteria for acceptance of models in a crop MME, exploring criteria for evaluating the degree of relatedness of models in a MME, studying the effect of number of models in the ensemble, development of a statistical model of model sampling, creation of a repository for MME results, studies of possible differential weighting of models in an ensemble, creation of single model ensembles based on sampling from the uncertainty distribution of parameter values or inputs specifically oriented toward uncertainty estimation, the creation of super ensembles that sample more than one source of uncertainty, the analysis of super ensemble results to obtain information on total uncertainty and the separate contributions of different sources of uncertainty and finally further investigation of the use of the multi-model mean or median as a predictor.
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Vosough Ahmadi, B., Shrestha, S., Thomson, S. G., Barnes, A. P., & Stott, A. W. (2015). Impacts of greening measures and flat rate regional payments of the Common Agricultural Policy on Scottish beef and sheep farms. J. Agric. Sci., 153(04), 676–688.
Abstract: The latest Common Agricultural Policy (CAP) reforms could bring substantial changes to Scottish farming communities. Two major components of this reform package, an introduction of environmental measures into the Pillar 1 payments and a move away from historical farm payments towards regionalized area payments, would have a significant effect on altering existing support structures for Scottish farmers, as it would for similar farm types elsewhere in Europe where historic payments are used. An optimizing farm-level model was developed to explore how Scottish beef and sheep farms might be affected by the greening and flat rate payments under the current CAP reforms. Nine different types of beef and sheep farms were identified and detailed biophysical and financial farm-level data for these farm types were used to parameterize the model. Results showed that the greening measures of the CAP did not have much impact on net margins of most of the beef and sheep farm businesses, except for ‘Beef Finisher’ farm types where the net margins decreased by 3%. However, all farm types were better off adopting the greening measures than not qualifying for the greening payments through non-compliance with the measures. The move to regionalized farm payments increased the negative financial impact of greening on most of the farms but it was still substantially lower than the financial sacrifice of not adopting greening measures. Results of maximizing farm net margin, under a hypothetical assumption of excluding farm payments, showed that in most of the mixed (sheep and cattle) and beef suckler cattle farms the optimum stock numbers predicted by the model were lower than actual figures on farm. When the regionalized support payments were allocated to each farm, the proportion of the mixed farms that would increase their stock numbers increased whereas this proportion decreased for beef suckler farms and no impact was predicted in sheep farms. Also under the regionalized support payments, improvements in profitability were found in mixed farms and sheep farms. Some of the specialized beef suckler farms also returned a profit when CAP support was added.
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Vitali, A., Felici, A., Esposito, S., Bernabucci, U., Bertocchi, L., Maresca, C., et al. (2015). The effect of heat waves on dairy cow mortality. J. Dairy Sci., 98(7), 4572–4579.
Abstract: This study investigated the mortality of dairy cows during heat waves. Mortality data (46,610 cases) referred to dairy cows older than 24 mo that died on a farm from all causes from May 1 to September 30 during a 6-yr period (2002-2007). Weather data were obtained from 12 weather stations located in different areas of Italy. Heat waves were defined for each weather station as a period of at least 3 consecutive days, from May 1 to September 30 (2002-2007), when the daily maximum temperature exceeded the 90th percentile of the reference distribution (1971-2000). Summer days were classified as days in heat wave (HW) or not in heat wave (nHW). Days in HW were numbered to evaluate the relationship between mortality and length of the wave. Finally, the first 3 nHW days after the end of a heat wave were also considered to account for potential prolonged effects. The mortality risk was evaluated using a case-crossover design. A conditional logistic regression model was used to calculate odds ratio and 95% confidence interval for mortality recorded in HW compared with that recorded in nHW days pooled and stratified by duration of exposure, age of cows, and month of occurrence. Dairy cows mortality was greater during HW compared with nHW days. Furthermore, compared with nHW days, the risk of mortality continued to be higher during the 3 d after the end of HW. Mortality increased with the length of the HW. Considering deaths stratified by age, cows up to 28 mo were not affected by HW, whereas all the other age categories of older cows (29-60, 61-96, and >96 mo) showed a greater mortality when exposed to HW. The risk of death during HW was higher in early summer months. In particular, the highest risk of mortality was observed during June HW. Present results strongly support the implementation of adaptation strategies which may limit heat stress-related impairment of animal welfare and economic losses in dairy cow farm during HW.
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Ventrella, D., Stellacci, A. M., Castrignanò, A., Charfeddine, M., & Castellini, M. (2016). Effects of crop residue management on winter durum wheat productivity in a long term experiment in Southern Italy. European Journal of Agronomy, 77, 188–198.
Abstract: A long-term experiment comparing different crop residue (CR) managements was established in 1977 in Foggia (Apulia region, southern Italy). The objective of this study was to investigate the long-term effects of different types of crop residue management on main yield response parameters in a continuous cropping system of winter durum wheat. In order to correctly interpret the results, models accounting for spatial error autocorrelation were used and compared with ordinary least square models. Eight crop residue management treatments, based on burning of wheat straw and stubble or their incorporation with or without N fertilization and irrigation, were compared. The experimental design was a complete randomized block with five replicates. Results indicated that the dynamics of yield, grain protein content and hectolitric weight of winter durum wheat did not show any decline as usually expected when a monoculture is carried out for a long time. In addition, the temporal variability of productivity was more affected by meteorological factors, such as air temperature and rainfall, than CR management treatments. Higher wheat grain yields and hectolitric weights quite frequently occurred after burning of wheat straw compared with straw incorporation without nitrogen fertilization and autumn irrigation and this was attributed to temporary mineral N immobilization in the soil. The rate of 50 kg ha(-1) of N seemed to counterbalance this negative effect when good condition of soil moisture occurred in the autumn period, so yielding the same productive level of straw burning treatment. (C) 2016 Elsevier B.V. All rights reserved.
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Van Oijen, M., & Höglind, M. (2016). Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design. Euphytica, 207(3), 627–643.
Abstract: Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway.
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