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Lorite, I. J., García-Vila, M., Santos, C., Ruiz-Ramos, M., & Fereres, E. (2013). AquaData and AquaGIS: Two computer utilities for temporal and spatial simulations of water-limited yield with AquaCrop. Computers and Electronics in Agriculture, 96, 227–237.
Abstract: The crop simulation model AquaCrop, recently developed by FAO can be used for a wide range of purposes. However, in its present form, its use over large areas or for applications that require a large number of simulations runs (e.g., long-term analysis), is not practical without developing software to facilitate such applications. Two tools for managing the inputs and outputs of AquaCrop, named AquaData and AquaGIS, have been developed for this purpose and are presented here. Both software utilities have been programmed in Delphi v. 5 and in addition, AquaGIS requires the Geographic Information System (GIS) programming tool MapObjects. These utilities allow the efficient management of input and output files, along with a GIS module to develop spatial analysis and effect spatial visualization of the results, facilitating knowledge dissemination. A sample of application of the utilities is given here, as an AquaCrop simulation analysis of impact of climate change on wheat yield in Southern Spain, which requires extensive input data preparation and output processing. The use of AquaCrop without the two utilities would have required approximately 1000 h of work, while the utilization of AquaData and AquaGIS reduced that time by more than 99%. Furthermore, the use of GIS, made it possible to perform a spatial analysis of the results, thus providing a new option to extend the use of the AquaCrop model to scales requiring spatial and temporal analyses. (C) 2013 Elsevier B.V. All rights reserved.
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Grosz, B., Dechow, R., Gebbert, S., Hoffmann, H., Zhao, G., Constantin, J., et al. (2017). The implication of input data aggregation on up-scaling soil organic carbon changes. Env. Model. Softw., 96, 361–377.
Abstract: In up-scaling studies, model input data aggregation is a common method to cope with deficient data availability and limit the computational effort. We analyzed model errors due to soil data aggregation for modeled SOC trends. For a region in North West Germany, gridded soil data of spatial resolutions between 1 km and 100 km has been derived by majority selection. This data was used to simulate changes in SOC for a period of 30 years by 7 biogeochemical models. Soil data aggregation strongly affected modeled SOC trends. Prediction errors of simulated SOC changes decreased with increasing spatial resolution of model output. Output data aggregation only marginally reduced differences of model outputs between models indicating that errors caused by deficient model structure are likely to persist even if requirements on the spatial resolution of model outputs are low. (C)2017 Elsevier Ltd. All rights reserved.
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Mansouri, M., Dumont, B., & Destain, M. - F. (2013). Modeling and prediction of nonlinear environmental system using Bayesian methods. Computers and Electronics in Agriculture, 92, 16–31.
Abstract: An environmental dynamic system is usually modeled as a nonlinear system described by a set of nonlinear ODEs. A central challenge in computational modeling of environmental systems is the determination of the model parameters. In these cases, estimating these variables or parameters from other easily obtained measurements can be extremely useful. This work addresses the problem of monitoring and modeling a leaf area index and soil moisture model (LSM) using state estimation. The performances of various conventional and state-of-the-art state estimation techniques are compared when they are utilized to achieve this objective. These techniques include the extended Kalman filter (EKF), particle filter (PF), and the more recently developed technique variational filter (VF). Specifically, two comparative studies are performed. In the first comparative study, the state variables (the leaf-area index LAI, the volumetric water content of the soil layer 1, HUR1 and the volumetric water content of the soil layer 2, HUR2) are estimated from noisy measurements of these variables, and the various estimation techniques are compared by computing the estimation root mean square error (RMSE) with respect to the noise-free data. In the second comparative study, the state variables as well as the model parameters are simultaneously estimated. In this case, in addition to comparing the performances of the various state estimation techniques, the effect of number of estimated model parameters on the accuracy and convergence of these techniques are also assessed. The results of both comparative studies show that the PF provides a higher accuracy than the EKF, which is due to the limited ability of the EKF to handle highly nonlinear processes. The results also show that the VF provides a significant improvement over the PF because, unlike the PF which depends on the choice of sampling distribution used to estimate the posterior distribution, the VF yields an optimum choice of the sampling distribution, which also accounts for the observed data. The results of the second comparative study show that, for all techniques, estimating more model parameters affects the estimation accuracy as well as the convergence of the estimated states and parameters. However, the VF can still provide both convergence as well as accuracy related advantages over other estimation methods. (C) 2013 Elsevier B.V. All rights reserved.
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Kuhnert, M., Yeluripati, J., Smith, P., Hoffmann, H., van Oijen, M., Constantin, J., et al. (2016). Impact analysis of climate data aggregation at different spatial scales on simulated net primary productivity for croplands. European Journal of Agronomy, 88, 41–52.
Abstract: For spatial crop and agro-systems modelling, there is often a discrepancy between the scale of measured driving data and the target resolution. Spatial data aggregation is often necessary, which can introduce additional uncertainty into the simulation results. Previous studies have shown that climate data aggregation has little effect on simulation of phenological stages, but effects on net primary production (NPP) might still be expected through changing the length of the growing season and the period of grain filling. This study investigates the impact of spatial climate data aggregation on NPP simulation results, applying eleven different models for the same study region (∼34,000 km2), situated in Western Germany. To isolate effects of climate, soil data and management were assumed to be constant over the entire study area and over the entire study period of 29 years. Two crops, winter wheat and silage maize, were tested as monocultures. Compared to the impact of climate data aggregation on yield, the effect on NPP is in a similar range, but is slightly lower, with only small impacts on averages over the entire simulation period and study region. Maximum differences between the five scales in the range of 1–100 km grid cells show changes of 0.4–7.8% and 0.0–4.8% for wheat and maize, respectively, whereas the simulated potential NPP averages of the models show a wide range (1.9–4.2 g C m−2 d−1 and 2.7–6.1 g C m−2 d−1for wheat and maize, respectively). The impact of the spatial aggregation was also tested for shorter time periods, to see if impacts over shorter periods attenuate over longer periods. The results show larger impacts for single years (up to 9.4% for wheat and up to 13.6% for maize). An analysis of extreme weather conditions shows an aggregation effect in vulnerability up to 12.8% and 15.5% between the different resolutions for wheat and maize, respectively. Simulations of NPP averages over larger areas (e.g. regional scale) and longer time periods (several years) are relatively insensitive to climate data.
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Makowski, D. (2017). A simple Bayesian method for adjusting ensemble of crop model outputs to yield observations. Europ. J. Agron., 88, 76–83.
Abstract: Multi-model forecasting has drawn some attention in crop science for evaluating effect of climate change on crop yields. The principle is to run several individual process-based crop models under several climate scenarios in order to generate ensembles of output values. This paper describes a simple Bayesian method – called Bayes linear method- for updating ensemble of crop model outputs using yield observations. The principle is to summarize the ensemble of crop model outputs by its mean and variance, and then to adjust these two quantities to yield observations in order to reduce uncertainty. The adjusted mean and variance combine two sources of information, i.e., the ensemble of crop model outputs and the observations. Interestingly, with this method, observations collected under a given climate scenario can be used to adjust mean and variance of the model ensemble under a different scenario. Another advantage of the proposed method is that it does not rely on a separate calibration of each individual crop model. The uncertainty reduction resulting from the adjustment of an ensemble of crop models to observations was assessed in a numerical application. The implementation of the Bayes linear method systematically reduced uncertainty, but the results showed the effectiveness of this method varied in function of several factors, especially the accuracy of the yield observation, and the covariance between the crop model output and the observation. (C) 2015 Elsevier B.V. All rights reserved.
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