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Sharif, B., Makowski, D., Plauborg, F., & Olesen, J. E. (2017). Comparison of regression techniques to predict response of oilseed rape yield to variation in climatic conditions in Denmark. Europ. J. Agron., 82, 11–20.
Abstract: Highlights • Regularization techniques for regression outperformed the classical regression techniques in predicting crop yields. • Different regression techniques with similar prediction accuracy showed different responses of major climatic variables to crop yield. • The regression models showed some responses of crop yield to climatic conditions that is mostly absent in process based crop models. Abstract Statistical regression models represent alternatives to process-based dynamic models for predicting the response of crop yields to variation in climatic conditions. Regression models can be used to quantify the effect of change in temperature and precipitation on yields. However, it is difficult to identify the most relevant input variables that should be included in regression models due to the high number of candidate variables and to their correlations. This paper compares several regression techniques for modeling response of winter oilseed rape yield to a high number of correlated input variables. Several statistical regression methods were fitted to a dataset including 689 observations of winter oilseed rape yield from replicated field experiments conducted in 239 sites in Denmark, covering nearly all regions of the country from 1992 to 2013. Regression methods were compared by cross-validation. The regression methods leading to the most accurate yield predictions were Lasso and Elastic Net, and the least accurate methods were ordinary least squares and stepwise regression. Partial least squares and ridge regression methods gave intermediate results. The estimated relative yield change for a +1°C temperature increase during flowering was estimated to range between 0 and +6 %, depending on choice of regression method. Precipitation was found to have an adverse effect on yield during autumn and winter. It was estimated that an increase in precipitation of +1 mm/day would result in a relative yield change ranging from 0 to −4 %. Soil type was also important for crop yields with lower yields on sandy soils compared to loamy soils. Later sowing was found to result in increased crop yield. The estimated effect of climate on yield was highly sensitive to the chosen regression method. Regression models showing similar performance led in some cases to different conclusions with respect to effect of temperature and precipitation. Hence, it is recommended to apply an ensemble of regression models, in order to account for the sensitivity of the data driven models for projecting crop yield under climate change.
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Sándor, R., Barcza, Z., Acutis, M., Doro, L., Hidy, D., Köchy, M., et al. (2016). Multi-model simulation of soil temperature, soil water content and biomass in Euro-Mediterranean grasslands: Uncertainties and ensemble performance. European Journal of Agronomy, .
Abstract: • We simulate biomass, soil water content (SWC) and temperature (ST) in grasslands. • We compare nine models to the multi-model median (MMM) at nine sites. • With model calibration, we obtain satisfactory estimates of ST, less of SWC and biomass. • We observe discrepancies across models in the simulation of grassland processes. • We improve performance with multi-model approach. This study presents results from a major grassland model intercomparison exercise, and highlights the main challenges faced in the implementation of a multi-model ensemble prediction system in grasslands. Nine, independently developed simulation models linking climate, soil, vegetation and management to grassland biogeochemical cycles and production were compared in a simulation of soil water content (SWC) and soil temperature (ST) in the topsoil, and of biomass production. The results were assessed against SWC and ST data from five observational grassland sites representing a range of conditions – Grillenburg in Germany, Laqueuille in France with both extensive and intensive management, Monte Bondone in Italy and Oensingen in Switzerland – and against yield measurements from the same sites and other experimental grassland sites in Europe and Israel. We present a comparison of model estimates from individual models to the multi-model ensemble (represented by multi-model median: MMM). With calibration (seven out of nine models), the performances were acceptable for weekly-aggregated ST (R² > 0.7 with individual models and >0.8–0.9 with MMM), but less satisfactory with SWC (R² < 0.6 with individual models and < ∼ 0.5 with MMM) and biomass (R² < ∼0.3 with both individual models and MMM). With individual models, maximum biases of about −5 °C for ST, −0.3 m3 m−3 for SWC and 360 g DM m−2 for yield, as well as negative modelling efficiencies and some high relative root mean square errors indicate low model performance, especially for biomass. We also found substantial discrepancies across different models, indicating considerable uncertainties regarding the simulation of grassland processes. The multi-model approach allowed for improved performance, but further progress is strongly needed in the way models represent processes in managed grassland systems.
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Wallach, D., Nissanka, S. P., Karunaratne, A. S., Weerakoon, W. M. W., Thorburn, P. J., Boote, K. J., et al. (2016). Accounting for both parameter and model structure uncertainty in crop model predictions of phenology: A case study on rice. European Journal of Agronomy, .
Abstract: We consider predictions of the impact of climate warming on rice development times in Sri Lanka. The major emphasis is on the uncertainty of the predictions, and in particular on the estimation of mean squared error of prediction. Three contributions to mean squared error are considered. The first is parameter uncertainty that results from model calibration. To take proper account of the complex data structure, generalized least squares is used to estimate the parameters and the variance-covariance matrix of the parameter estimators. The second contribution is model structure uncertainty, which we estimate using two different models. An ANOVA analysis is used to separate the contributions of parameter and model uncertainty to mean squared error. The third contribution is model error, which is estimated using hindcasts. Mean squared error of prediction of time from emergence to maturity, for baseline +2 °C, is estimated as 108 days2, with model error contributing 86 days2, followed by model structure uncertainty which contributes 15 days2 and parameter uncertainty which contributes 7 days2. We also show how prediction uncertainty is reduced if prediction concerns development time averaged over years, or the difference in development time between baseline and warmer temperatures.
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Ventrella, D., Stellacci, A. M., Castrignanò, A., Charfeddine, M., & Castellini, M. (2016). Effects of crop residue management on winter durum wheat productivity in a long term experiment in Southern Italy. European Journal of Agronomy, 77, 188–198.
Abstract: A long-term experiment comparing different crop residue (CR) managements was established in 1977 in Foggia (Apulia region, southern Italy). The objective of this study was to investigate the long-term effects of different types of crop residue management on main yield response parameters in a continuous cropping system of winter durum wheat. In order to correctly interpret the results, models accounting for spatial error autocorrelation were used and compared with ordinary least square models. Eight crop residue management treatments, based on burning of wheat straw and stubble or their incorporation with or without N fertilization and irrigation, were compared. The experimental design was a complete randomized block with five replicates. Results indicated that the dynamics of yield, grain protein content and hectolitric weight of winter durum wheat did not show any decline as usually expected when a monoculture is carried out for a long time. In addition, the temporal variability of productivity was more affected by meteorological factors, such as air temperature and rainfall, than CR management treatments. Higher wheat grain yields and hectolitric weights quite frequently occurred after burning of wheat straw compared with straw incorporation without nitrogen fertilization and autumn irrigation and this was attributed to temporary mineral N immobilization in the soil. The rate of 50 kg ha(-1) of N seemed to counterbalance this negative effect when good condition of soil moisture occurred in the autumn period, so yielding the same productive level of straw burning treatment. (C) 2016 Elsevier B.V. All rights reserved.
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Webber, H., Zhao, G., Wolf, J., Britz, W., Vries, W. de, Gaiser, T., et al. (2015). Climate change impacts on European crop yields: Do we need to consider nitrogen limitation. European Journal of Agronomy, 71, 123–134.
Abstract: Global climate impact studies with crop models suggest that including nitrogen and water limitation causes greater negative climate change impacts on actual yields compared to water-limitation only. We simulated water limited and nitrogen water limited yields across the EU-27 to 2050 for six key crops with the SIMPLACE<LINTUL5, DRUNIR, HEAT> model to assess how important consideration of nitrogen limitation is in climate impact studies for European cropping systems. We further investigated how crop nitrogen use may change under future climate change scenarios. Our results suggest that inclusion of nitrogen limitation hardly changed crop yield response to climate for the spring-sown crops considered (grain maize, potato, and sugar beet). However, for winter-sown crops (winter barley, winter rapeseed and winter wheat), simulated impacts to 2050 were more negative when nitrogen limitation was considered, especially with high levels of water stress. Future nitrogen use rates are likely to decrease due to climate change for spring-sown crops, largely in parallel with their yields. These results imply that climate change impact studies for winter-sown crops should consider N-fertilization. Specification of future N fertilization rates is a methodological challenge that is likely to need integrated assessment models to address.
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