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Makowski, D. (2017). A simple Bayesian method for adjusting ensemble of crop model outputs to yield observations. Europ. J. Agron., 88, 76–83.
Abstract: Multi-model forecasting has drawn some attention in crop science for evaluating effect of climate change on crop yields. The principle is to run several individual process-based crop models under several climate scenarios in order to generate ensembles of output values. This paper describes a simple Bayesian method – called Bayes linear method- for updating ensemble of crop model outputs using yield observations. The principle is to summarize the ensemble of crop model outputs by its mean and variance, and then to adjust these two quantities to yield observations in order to reduce uncertainty. The adjusted mean and variance combine two sources of information, i.e., the ensemble of crop model outputs and the observations. Interestingly, with this method, observations collected under a given climate scenario can be used to adjust mean and variance of the model ensemble under a different scenario. Another advantage of the proposed method is that it does not rely on a separate calibration of each individual crop model. The uncertainty reduction resulting from the adjustment of an ensemble of crop models to observations was assessed in a numerical application. The implementation of the Bayes linear method systematically reduced uncertainty, but the results showed the effectiveness of this method varied in function of several factors, especially the accuracy of the yield observation, and the covariance between the crop model output and the observation. (C) 2015 Elsevier B.V. All rights reserved.
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Makowski, D., Asseng, S., Ewert, F., Bassu, S., Durand, J. L., Li, T., et al. (2015). A statistical analysis of three ensembles of crop model responses to temperature and CO2 concentration. Agricultural and Forest Meteorology, 214-215, 483–493.
Abstract: Ensembles of process-based crop models are increasingly used to simulate crop growth for scenarios of temperature and/or precipitation changes corresponding to different projections of atmospheric CO2 concentrations. This approach generates large datasets with thousands of simulated crop yield data. Such datasets potentially provide new information but it is difficult to summarize them in a useful way due to their structural complexities. An associated issue is that it is not straightforward to compare crops and to interpolate the results to alternative climate scenarios not initially included in the simulation protocols. Here we demonstrate that statistical models based on random-coefficient regressions are able to emulate ensembles of process-based crop models. An important advantage of the proposed statistical models is that they can interpolate between temperature levels and between CO2 concentration levels, and can thus be used to calculate temperature and [CO2] thresholds leading to yield loss or yield gain, without rerunning the original complex crop models. Our approach is illustrated with three yield datasets simulated by 19 maize models, 26 wheat models, and 13 rice models. Several statistical models are fitted to these datasets, and are then used to analyze the variability of the yield response to [CO2] and temperature. Based on our results, we show that, for wheat, a [CO2] increase is likely to outweigh the negative effect of a temperature increase of +2 degrees C in the considered sites. Compared to wheat, required levels of [CO2] increase are much higher for maize, and intermediate for rice. For all crops, uncertainties in simulating climate change impacts increase more with temperature than with elevated [CO2].
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Malone, R. W., Kersebaum, K. C., Kaspar, T. C., Ma, L., Jaynes, D. B., & Gillette, K. (2017). Winter rye as a cover crop reduces nitrate loss to subsurface drainage as simulated by HERMES. Agric. Water Manage., 184, 156–169.
Abstract: HERMES is a widely used agricultural system model; however, it has never been tested for simulating N loss to subsurface drainage. Here, we integrated a simple drain flbw component into HERMES. We then compared the predictions to four years of data (2002-2005) from central Iowa fields in corn-oybean with winter rye as a cover crop (CC) and without winter rye (NCC). We also compared the HERMES predictions to the more complex Root Zone Water Quality Model (RZWQM) predictions for the same dataset. The average annual observed and simulated N loss to drain flow were 43.8 and 44.4 kg N/ha (NCC) and 17.6 and 18.9 kg N/ha (CC). The slightly over predicted N loss for CC was because of over predicted nitrate concentration, which may be partly caused by slightly under predicted average annual rye shoot N (observed and simulated values were 47.8 and 46.0 kg N/ha). Also, recent research from the site suggests that the soil field capacity may be greater in CC while we used the same soil parameters for both treatments. A local sensitivity analysis suggests that increased field capacity affects HERMES simulations, which includes reduced drain flow nitrate concentrations, increased denitrification, and reduced drain flow volume. HERMES-simulated cumulative monthly drain flow and annual drain flow were reasonable compared to field data and HERMES performance was comparable to other published drainage model tests. Unlike the RZWQM simulations, however, the modified HERMES did riot accurately simulate the year to year variability in nitrate concentration difference between NCC and CC, possibly due in part to the lack of partial mixing and displacement of the soil solution. The results suggest that 1) the relatively simple model HERMES is a promising tool to estimate annual N loss to drain flow under corn-soybean rotations with winter rye as a cover crop and 2) soil field capacity is a critical parameter to investigate to more thoroughly understand and appropriately model denitrification and N losses to subsurface drainage. Published by Elsevier B.V.
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Mandryk, M., Reidsma, P., Kanellopoulos, A., Groot, J. C. J., & van Ittersum, M. K. (2014). The role of farmers’ objectives in current farm practices and adaptation preferences: a case study in Flevoland, the Netherlands. Reg Environ Change, 14(4), 1463–1478.
Abstract: The diversity in farmers’ objectives and responses to external drivers is usually not considered in integrated assessment studies that investigate impacts and adaptation to climate and socio-economic change. Here, we present an approach to assess how farmers’ stated objectives relate to their currently implemented practices and to preferred adaptation options, and we discuss what this implies for assessments of future changes. We based our approach on a combination of multi-criteria decision-making methods. We consistently assessed the importance of farmers’ objectives and adaptation preferences from what farmers say (based on interviews), from what farmers actually do (by analysing current farm performance) and from what farmers want (through a selected alternative farm plan). Our study was performed for six arable farms in Flevoland, a province in the Netherlands. Based on interviews with farmers, we reduced the long list of possible objectives to the most important ones. The objectives we assessed included maximization of economic result and soil organic matter, and minimization of gross margin variance, working hours and nitrogen balance. In our sample, farmers’ stated preferences in objectives were often not fully reflected in realized farming practices. Adaptation preferences of farmers largely resembled their current performance, but generally involved a trend towards stated preferences. Our results suggest that in Flevoland, although farmers do have more objectives, in practical decision-making they focus on economic result maximization, while for strategic decision-making they account for objectives influencing long-term performance and indicators associated with sustainability, in this case soil organic matter.
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Mansouri, M., & Destain, M. - F. (2015). Predicting biomass and grain protein content using Bayesian methods. Stoch. Environ. Res. Risk Assess., 29(4), 1167–1177.
Abstract: This paper deals with the problem of predicting biomass and grain protein content using improved particle filtering (IPF) based on minimizing the Kullback-Leibler divergence. The performances of IPF are compared with those of the conventional particle filtering (PF) in two comparative studies. In the first one, we apply IPF and PF at a simple dynamic crop model with the aim to predict a single state variable, namely the winter wheat biomass, and to estimate several model parameters. In the second study, the proposed IPF and the PF are applied to a complex crop model (AZODYN) to predict a winter-wheat quality criterion, namely the grain protein content. The results of both comparative studies reveal that the IPF method provides a better estimation accuracy than the PF method. The benefit of the IPF method lies in its ability to provide accuracy related advantages over the PF method since, unlike the PF which depends on the choice of the sampling distribution used to estimate the posterior distribution, the IPF yields an optimum choice of this sampling distribution, which also utilizes the observed data. The performance of the proposed method is evaluated in terms of estimation accuracy, root mean square error, mean absolute error and execution times.
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