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Van Oijen, M., & Höglind, M. (2016). Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design. Euphytica, 207(3), 627–643.
Abstract: Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway.
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Caubel, J., García de Cortázar-Atauri, I., Launay, M., de Noblet-Ducoudré, N., Huard, F., Bertuzzi, P., et al. (2015). Broadening the scope for ecoclimatic indicators to assess crop climate suitability according to ecophysiological, technical and quality criteria. Agricultural and Forest Meteorology, 207, 94–106.
Abstract: The cultivation of crops in a given area is highly dependent of climatic conditions. Assessment of how the climate is favorable is highly useful for planners, land managers, farmers and plant breeders who can propose and apply adaptation strategies to improve agricultural potentialities. The aim of this study was to develop an assessment method for crop-climate suitability that was generic enough to be applied to a wide range of issues and crops. The method proposed is based on agroclimatic indicators that are calculated over phenological periods (ecoclimatic indicators). These indicators are highly relevant since they provide accurate information about the effect of climate on particular plant processes and cultural practices that take place during specific phenological periods. Three case studies were performed in order to illustrate the potentialities of the method. They concern annual (maize and wheat) and perennial (grape) crops and focus on the study of climate suitability in terms of the following criteria: ecophysiological, days available to carry out cultural practices, and harvest quality. The analysis of the results revealed both the advantages and limitations of the method. The method is general and flexible enough to be applied to a wide range of issues even if an expert assessment is initially needed to build the analysis framework. The limited number of input data makes it possible to use it to explore future possibilities for agriculture in many areas. The access to intermediate information through elementary ecoclimatic indicators allows users to propose targeted adaptations when climate suitability is not satisfactory.
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Lorite, I. J., Gabaldon-Leal, C., Ruiz-Ramos, M., Belaj, A., de la Rosa, R., Leon, L., et al. (2018). Evaluation of olive response and adaptation strategies to climate change under semi-arid conditions. Agric. Water Manage., 204, 247–261.
Abstract: AdaptaOlive is a simplified physically-based model that has been developed to assess the behavior of olive under future climate conditions in Andalusia, southern Spain. The integration of different approaches based on experimental data from previous studies, combined with weather data from 11 climate models, is aimed at overcoming the high degree of uncertainty in the simulation of the response of agricultural systems under predicted climate conditions. The AdaptaOlive model was applied in a representative olive orchard in the Baeza area, one of the main producer zone in Spain, with the cultivar ‘Picual’. Simulations for the end of the 21st century showed olive oil yield increases of 7.1 and 28.9% under rainfed and full irrigated conditions, respectively, while irrigation requirements decreased between 0.5 and 6.2% for full irrigation and regulated deficit irrigation, respectively. These effects were caused by the positive impact of the increase in atmospheric CO2 that counterbalanced the negative impacts of the reduction in rainfall. The high degree of uncertainty associated with climate projections translated into a high range of yield and irrigation requirement projections, confirming the need for an ensemble of climate models in climate change impact assessment. The AdaptaOlive model also was applied for evaluating adaptation strategies related to cultivars, irrigation strategies and locations. The best performance was registered for cultivars with early flowering dates and regulated deficit irrigation. Thus, in the Baeza area full irrigation requirements were reduced by 12% and the yield in rainfed conditions increased by 7% compared with late flowering cultivars. Similarly, regulated deficit irrigation requirements and yield were reduced by 46% and 18%, respectively, compared with full irrigation. The results confirm the promise offered by these strategies as adaptation measures for managing an olive crop under semi-arid conditions in a changing climate.
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Gabaldón-Leal, C., Webber, H., Otegui, M. E., Slafer, G. A., Ordonez, R. A., Gaiser, T., et al. (2016). Modelling the impact of heat stress on maize yield formation. Field Crops Research, 198, 226–237.
Abstract: The frequency and intensity of extreme high temperature events are expected to increase with climate change. Higher temperatures near anthesis have a large negative effect on maize (Zea mays, L.) grain yield. While crop growth models are commonly used to assess climate change impacts on maize and other crops, it is only recently that they have accounted for such heat stress effects, despite limited field data availability for model evaluation. There is also increasing awareness but limited testing of the importance of canopy temperature as compared to air temperature for heat stress impact simulations. In this study, four independent irrigated field trials with controlled heating imposed using polyethylene shelters were used to develop and evaluate a heat stress response function in the crop modeling framework SIMPLACE, in which the Lintul5 crop model was combined with a canopy temperature model. A dataset from Argentina with the temperate hybrid Nidera AX 842 MG (RM 119) was used to develop a yield reduction function based on accumulated hourly stress thermal time above a critical temperature of 34 degrees C. A second dataset from Spain with a FAO 700 cultivar was used to evaluate the model with daily weather inputs in two sets of simulations. The first was used to calibrate SIMPLACE for conditions with no heat stress, and the second was used to evaluate SIMPLACE under conditions of heat stress using the reduction factor obtained with the Argentine dataset. Both sets of simulations were conducted twice; with the heat stress function alternatively driven with air and simulated canopy temperature. Grain yield simulated under heat stress conditions improved when canopy temperature was used instead of air temperature (RMSE equal to 175 and 309 g m(-2), respectively). For the irrigated and high radiative conditions, raising the critical threshold temperature for heat stress to 39 degrees C improved yield simulation using air temperature (RMSE: 221 gm(-2)) without the need to simulate canopy temperature (RMSE: 175 gm(-2)). However, this approach of adjusting thresholds is only likely to work in environments where climatic variables and the level of soil water deficit are constant, such as irrigated conditions and are not appropriate for rainfed production conditions. (C) 2016 Elsevier B.V. All rights reserved.
Keywords: Heat stress; Maize; Zea mays (L); Crop models; HIGH-TEMPERATURE STRESS; KERNEL NUMBER; CROP GROWTH; GRAIN-YIELD; SIMULATION; CLIMATE; HYBRIDS; SET; VALIDATION; COMPONENTS
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Malone, R. W., Kersebaum, K. C., Kaspar, T. C., Ma, L., Jaynes, D. B., & Gillette, K. (2017). Winter rye as a cover crop reduces nitrate loss to subsurface drainage as simulated by HERMES. Agric. Water Manage., 184, 156–169.
Abstract: HERMES is a widely used agricultural system model; however, it has never been tested for simulating N loss to subsurface drainage. Here, we integrated a simple drain flbw component into HERMES. We then compared the predictions to four years of data (2002-2005) from central Iowa fields in corn-oybean with winter rye as a cover crop (CC) and without winter rye (NCC). We also compared the HERMES predictions to the more complex Root Zone Water Quality Model (RZWQM) predictions for the same dataset. The average annual observed and simulated N loss to drain flow were 43.8 and 44.4 kg N/ha (NCC) and 17.6 and 18.9 kg N/ha (CC). The slightly over predicted N loss for CC was because of over predicted nitrate concentration, which may be partly caused by slightly under predicted average annual rye shoot N (observed and simulated values were 47.8 and 46.0 kg N/ha). Also, recent research from the site suggests that the soil field capacity may be greater in CC while we used the same soil parameters for both treatments. A local sensitivity analysis suggests that increased field capacity affects HERMES simulations, which includes reduced drain flow nitrate concentrations, increased denitrification, and reduced drain flow volume. HERMES-simulated cumulative monthly drain flow and annual drain flow were reasonable compared to field data and HERMES performance was comparable to other published drainage model tests. Unlike the RZWQM simulations, however, the modified HERMES did riot accurately simulate the year to year variability in nitrate concentration difference between NCC and CC, possibly due in part to the lack of partial mixing and displacement of the soil solution. The results suggest that 1) the relatively simple model HERMES is a promising tool to estimate annual N loss to drain flow under corn-soybean rotations with winter rye as a cover crop and 2) soil field capacity is a critical parameter to investigate to more thoroughly understand and appropriately model denitrification and N losses to subsurface drainage. Published by Elsevier B.V.
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