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Van Oijen, M., & Höglind, M. (2016). Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design. Euphytica, 207(3), 627–643.
Abstract: Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway.
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Walkiewicz, A., Bulak, P., Brzezinska, M., Wnuk, E., & Bieganowski, A. (2016). Methane oxidation in heavy metal contaminated Mollic Gleysol under oxic and hypoxic conditions. Environ. Pollut., 213, 403–411.
Abstract: Soils are the largest terrestrial sink for methane (CH4). However, heavy metals may exert toxicity to soil microorganisms, including methanotrophic bacteria. We tested the effect of lead (Pb), zinc (Zn) and nickel (Ni) on CH4 oxidation (1% v/v) and dehydrogenase activity, an index of the activity of the total soil microbial community in Mollic Gleysol soil in oxic and hypoxic conditions (oxia and hypoxia, 20% and 10% v/v O2, respectively). Metals were added in doses corresponding to the amounts permitted of Pb, Zn, Ni in agricultural soils (60, 120, 35 mg kg(-1), respectively), and half and double of these doses. Relatively low metal contents and O2 status reflect the conditions of most agricultural soils of temperate regions. Methane consumption showed high tolerance to heavy metals. The effect of O2 status was stronger than that of metals. CH4 consumption was enhanced under hypoxia, where both the start and the completion of the control and contaminated treatment were faster than under oxic conditions. Dehydrogenase activity, showed higher sensitivity to the contamination (except for low Ni dose), with a stronger effect of heavy metals, than that of the O2 status.
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Weindl, I., Popp, A., Bodirsky, B. L., Rolinski, S., Lotze-Campen, H., Biewald, A., et al. (2017). Livestock and human use of land: Productivity trends and dietary choices as drivers of future land and carbon dynamics. Global And Planetary Change, 159, 1–10.
Abstract: Land use change has been the primary driving force of human alteration of terrestrial ecosystems. With 80% of agricultural land dedicated to livestock production, the sector is an important lever to attenuate land requirements for food production and carbon emissions from land use change. In this study, we quantify impacts of changing human diets and livestock productivity on land dynamics and depletion of carbon stored in vegetation, litter and soils. Across all investigated productivity pathways, lower consumption of livestock products can substantially reduce deforestation (47-55%) and cumulative carbon losses (34-57%). On the supply side, already minor productivity growth in extensive livestock production systems leads to substantial CO2 emission abatement, but the emission saving potential of productivity gains in intensive systems is limited, also involving trade-offs with soil carbon stocks. If accounting for uncertainties related to future trade restrictions, crop yields and pasture productivity, the range of projected carbon savings from changing diets increases to 23-78%. Highest abatement of carbon emissions (63-78%) can be achieved if reduced consumption of animal-based products is combined with sustained investments into productivity increases in plant production. Our analysis emphasizes the importance to integrate demand- and supply-side oriented mitigation strategies and to combine efforts in the crop and livestock sector to enable synergies for climate protection.
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Zhang, W., Liu, C., Zheng, X., Zhou, Z., Cui, F., Zhu, B., et al. (2015). Comparison of the DNDC, LandscapeDNDC and IAP-N-GAS models for simulating nitrous oxide and nitric oxide emissions from the winter wheat–summer maize rotation system. Agricultural Systems, 140, 1–10.
Abstract: The DNDC, LandscapeDNDC and IAP-N-GAS models have been designed to simulate the carbon and nitrogen processes of terrestrial ecosystems. Until now, a comparison of these models using simultaneous observations has not been reported, although such a comparison is essential for further model development and application. This study aimed to evaluate the performance of the models, delineate the strengths and limitations of each model for simulating soil nitrous oxide (N2O) and nitric oxide (NO) emissions, and explore short-comings of these models that may require reconsideration. We conducted comparisons among the models using simultaneous observations of both gases and relevant variables from the winter wheat-summer maize rotation system at three field sites with calcareous soils. Simulations of N2O and NO emissions by the three models agreed well with annual observations, but not with daily observations. All models failed to correctly simulate soil moisture, which could explain some of the incorrect daily fluxes of N2O and NO, especially for intensive fluxes during the growing season. Multi-model ensembles are promising approaches to better simulate daily gas emissions. IAP-N-GAS underestimated the priming effect of straw incorporation on N2O and NO emissions, but better results were obtained with DNDC95 and LandscapeDNDC. LandscapeDNDC and IAP-N-GAS need to improve the simulation of irrigation water allocation and residue decomposition processes, respectively, and together to distinguish different irrigation methods as DNDC95 does. All three models overestimated the emissions of the nitrogenous gases for high nitrogen fertilizer (>430 kg N ha(-1) yr(-1)) addition treatments, and therefore, future research should focus more on the simulation of the limitation of soil dissolvable organic carbon on denitrification in calcareous soils.
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