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Kersebaum, C., Kollas, C., Bindi, M., Nendel, C., Ferrise, R., Moriondo, M., et al. (2014). Modelling complex crop rotations and management across sites in Europe with an ensemble of models..
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Yin, X., Kersebaum, K. - C., Beaudoin, N., Constantin, J., Chen, F., Louarn, G., et al. (2020). Uncertainties in simulating N uptake, net N mineralization, soil mineral N and N leaching in European crop rotations using process-based models. Field Crops Research, , 107863.
Abstract: Modelling N transformations within cropping systems is crucial for N management optimization in order to increase N use efficiency and reduce N losses. Such modelling remains challenging because of the complexity of N cycling in soil–plant systems. In the current study, the uncertainties of six widely used process-based models (PBMs), including APSIM, CROPSYST, DAISY, FASSET, HERMES and STICS, were tested in simulating different N managements (catch crops (CC) and different N fertilizer rates) in 12-year rotations in Western Europe. Winter wheat, sugar beet and pea were the main crops, and radish was the main CC in the tested systems. Our results showed that PBMs simulated yield, aboveground biomass, N export and N uptake well with low RMSE values, except for sugar beet, which was generally less well parameterized. Moreover, PBMs provided more accurate crop simulations (i.e. N export and N uptake) compared to simulations of soil (N mineralization and soil mineral N (SMN)) and environmental variables (N leaching). The use of multi-model ensemble mean or median of four PBMs significantly reduced the mean absolute percentage error (MAPE) between simulations and observations to less than 15% for yield, aboveground biomass, N export and N uptake. Multi-model ensemble also significantly reduced the MAPE for net N mineralization and annual N leaching to around 15%, while it was larger than 20% for SMN. Generally, PBMs well simulated the CC effects on N fluxes, i.e. increasing N mineralization and reducing N leaching in both short-term and long-term, and all PBMs correctly predicted the effects of the reduced N rate on all measured variables in the study. The uncertainties of multi-model ensemble for N mineralization, SMN and N leaching were larger, mainly because these variables are influenced by plant-soil interactions and subject to cumulative long-term effects in crop rotations, which makes them more difficult to simulate. Large differences existed between individual PBMs due to the differences in formalisms for describing N processes in soil–plant systems, the skills of modelers and the model calibration level. In addition, the model performance also depended on the simulated variables, for instance, HERMES and FASSET performed better for yield and crop biomass, APSIM, DAISY and STICS performed better for N export and N uptake, STICS provided best simulation for SMN and N leaching among the six individual PBMs in the study, but all PBMs met difficulties to well predict either average or variance of soil N mineralization. Our results showed that better calibration for soil N variables is needed to improve model predictions of N cycling in order to optimize N management in crop rotations.
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Sharif, B. (2015). Inter-comparison of statistical models for projecting winter oilseed rape yield in Europe under climate change (Vol. 5).
Abstract: While intercomparison of process-based crop models for projections under climate change is being intensively studied at European as well as at the global scale, little effort has been made for comparing statistical models. In this study, several regression techniques (ordinary least squares, stepwise, shrinkage methods, principle components and partial least squares) were combined with different types of climate input variables (with different temporal resolution) in order to define a large range of statistical models. Each model was fitted to winter oilseed rape data collected in 689, 325 and 173 field experiments carried out in Denmark, Germany, and Czech Republic, respectively. The fitted models were then used to predict yield of winter oilseed rape in the field experiments during more than 20 years, up to 2013. Interpretability of the estimated climate variable effects and accuracy of yield predictions were both analysed. Results suggest that recent statistical methods (e.g., shrinkage methods) may have considerable capabilities to complement traditional statistical methods in yield prediction. The selection of the most influential variables was strongly influenced by the statistical method used to analyse the data. Among the most recent statistical methods, the uncertainties in projecting yield of winter oilseed rape under climate change were mainly due to residual errors and uncertainty in estimated parameter values, and not to model choice. No Label
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Sharif, B., Mankowski, D., Kersebaum, K. C., Trnka, M., Schelde, K., & Olsesen, J. E. (2015). Empirical analysis on crop-weather relationships (Vol. 6).
Abstract: There have been several studies, where process-based crop models are developed, used and compared in order to project crop production and corresponding model uncertainties under climate change. Despite many advances in this field, there are some correlations between climate variables and crop growth, such as pest and diseases, that is often absent in process-based models. Such relationships can be simulated using empirical models. In this study, several statistical techniques were applied on winter oilseed rape data collected in some European countries. The empirical models were then used to predict yield of winter oilseed rape in the field experiments during more than 20 years, up to 2013. Results suggest that newly developed regression techniques such as shrinkage methods work well both in yield projections and finding the influential climatic variables. Many of regression techniques agree in terms of yield prediction; however, choice of significant climate variables is rather sensitive to the choice of regression technique. No Label
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Sharif, B., Olesen, J. E., & Schelde, K. (2014). Statistical learning approach for modelling the effects of climate change on oilseed rape yield. FACCE MACSUR Mid-term Scientific Conference, 3(S) Sassari, Italy.
Abstract: Statistical learning is a fairly new term referring to a set of supervised and unsupervised modelling and prediction techniques. It is based on traditional statistics but has been highly enhanced inspired by developments in machine learning and data mining. The main focus of statistical learning is to estimate the functions that quantify relations between several parameters and observed responses. These functions are further used for prediction, inference or a combination of both. For a particular case of quantitative responses, regularization techniques in regression are developed to overcome the weaknesses of ordinary least square (OLS) regression in prediction. These new shrinkage methods outperform OLS for prediction, especially in large datasets. In this study, a large dataset of field experiments on winter oilseed rape in Denmark for 22 years (1992 to 2013) was collected. Biweekly climatic data along with sowing date, harvest date, soil type and previous crop are considered as the explanatory variables. Yield of winter oilseed rape is considered as response variable. LASSO and Elastic Nets are the regularization techniques used to estimate the functions. Hold-one-out cross validation method for testing the prediction power reveals that these techniques are much useful in both prediction and inference. Since these techniques are included in recent versions of some software packages (e.g. R), they can be easily implemented by users at any level. The estimated function (model) is further used to predict the oilseed rape yield responses to climate change for several scenarios using representative weather data produced by a weather generator.
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