De Swaef, T., Bellocchi, G., Aper, J., Lootens, P., & Roldan-Ruiz, I. (2019). Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality. J. Experim. Bot., 70(9), 2587–2604.
Abstract: Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized.
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Lardy, R., Bellocchi, G., & Martin, R. (2015). Vuln-Indices: Software to assess vulnerability to climate change. Computers and Electronics in Agriculture, 114, 53–57.
Abstract: Vuln-Indices Java-based software was developed on concepts of vulnerability to climate change of agro-ecological systems. It implements the calculation of vulnerability indices on series of state variables for assessments at both site and region levels. The tool is useful because synthetic indices help capturing complex processes and prove effective to identify the factors responsible for vulnerability and their relative importance. It is suggested that the tool may be plausible for use with stakeholders to disseminate information of climate change impacts. (C) 2015 Elsevier B.V. All rights reserved.
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Bellocchi, G., Martin, R., Shtiliyanova, A., Ben Touhami, H., & Carrère, P. (2014). Vul’Clim – Climate change vulnerability studies in the region Auvergne (France) (Vol. 3).
Abstract: The region Auvergne (France) is a major livestock territory in Europe (beef and dairy cattle with permanent grasslands), with a place in climate change regional studies assisting policy makers and actors in identifying adaptation and mitigation measures. Vul’Clim is a research grant (Bourse Recherche Filière) of the region Auvergne (February 2014-September 2015) to develop model-based vulnerability analysis approaches for a detailed assessment of climate change impacts at regional scale. Its main goal is the creation of a computer-aided platform for vulnerability assessment of grasslands, in interaction with stakeholders from a cluster of eco-enterprises. A modelling engine provided by the mechanistic, biogeochemical model PaSim (Pasture Simulation model) is the core of the platform. An action studies the changes of scales by varying the granularity of the data available at a given scale (e.g. climate data supplied by global scenarios) to let them being exploited at another scale (e.g. high-resolution pixels). Another action is to develop an assessment framework linking modelling tools to entry data and outputs, including a variety of components: data-entry manager at different spatial resolutions; automatic computation of indicators; gap-filling and data quality check; simulation kernel with the model(s) used; device to represent results as maps and integrated indicators. No Label
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Bellocchi, G., Martin, R., Shtiliyanova, A., Ben Touhami, H., & Carrère, P. (2014). Vul’Clim – Climate change vulnerability studies in the region Auvergne (France). FACCE MACSUR Mid-term Scientific Conference, 3(S) Sassari, Italy.
Abstract: The region Auvergne (France) is a major livestock territory in Europe (beef and dairy cattle with permanent grasslands), with a place in climate change regional studies assisting policy makers and actors in identifying adaptation and mitigation measures. Vul’Clim is a research grant (Bourse Recherche Filière) of the region Auvergne (February 2014-September 2015) to develop model-based vulnerability analysis approaches for a detailed assessment of climate change impacts at regional scale. Its main goal is the creation of a computer-aided platform for vulnerability assessment of grasslands, in interaction with stakeholders from a cluster of eco-enterprises. A modelling engine provided by the mechanistic, biogeochemical model PaSim (Pasture Simulation model) is the core of the platform. An action studies the changes of scales by varying the granularity of the data available at a given scale (e.g. climate data supplied by global scenarios) to let them being exploited at another scale (e.g. high-resolution pixels). Another action is to develop an assessment framework linking modelling tools to entry data and outputs, including a variety of components: data-entry manager at different spatial resolutions; automatic computation of indicators; gap-filling and data quality check; simulation kernel with the model(s) used; device to represent results as maps and integrated indicators.
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