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Kipling, R. P., Bannink, A., Özkan Gülzari, Ş., & Van Middelkoop, J. (2016). Editorial. Advances in Animal Biosciences, 7(03)(03), 223.
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Bannink, A., van Lingen, H. J., Ellis, J. L., France, J., & Dijkstra, J. (2016). The contribution of mathematical modeling to understanding dynamic aspects of rumen metabolism. Frontiers in Microbiology, 7, 1820.
Abstract: All mechanistic rumen models cover the main drivers of variation in rumen function, which are feed intake, the differences between feedstuffs and feeds in their intrinsic rumen degradation characteristics, and fractional outflow rate of fluid and particulate matter. Dynamic modeling approaches are best suited to the prediction of more nuanced responses in rumen metabolism, and represent the dynamics of the interactions between substrates and micro-organisms and inter-microbial interactions. The concepts of dynamics are discussed for the case of rumen starch digestion as influenced by starch intake rate and frequency of feed intake, and for the case of fermentation of fiber in the large intestine. Adding representations of new functional classes of micro-organisms (i.e., with new characteristics from the perspective of whole rumen function) in rumen models only delivers new insights if complemented by the dynamics of their interactions with other functional classes. Rumen fermentation conditions have to be represented due to their profound impact on the dynamics of substrate degradation and microbial metabolism. Although the importance of rumen pH is generally acknowledged, more emphasis is needed on predicting its variation as well as variation in the processes that underlie rumen fluid dynamics. The rumen wall has an important role in adapting to rapid changes in the rumen environment, clearing of volatile fatty acids (VFA), and maintaining rumen pH within limits. Dynamics of rumen wall epithelia and their role in VFA absorption needs to be better represented in models that aim to predict rumen responses across nutritional or physiological states. For a detailed prediction of rumen N balance there is merit in a dynamic modeling approach compared to the static approaches adopted in current protein evaluation systems. Improvement is needed on previous attempts to predict rumen VFA profiles, and this should be pursued by introducing factors that relate more to microbial metabolism. For rumen model construction, data on rumen microbiomes are preferably coupled with knowledge consolidated in rumen models instead of relying on correlations with rather general aspects of treatment or animal. This helps to prevent the disregard of basic principles and underlying mechanisms of whole rumen function.
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Köchy, M., Aberton, M., Bannink, A., Banse, M., Brouwer, F., Brüser, K., et al. (2015). MACSUR — Summary of research results, phase 1: 2012-2015 (Vol. 6).
Abstract: MACSUR — Modelling European Agriculture with Climate Change for Food Security — is a knowledge hub that was formally created in June 2012 as a European scientific network. The strategic aim of the knowledge hub is to create a coordinated and globally visible network of European researchers and research groups, with intra- and interdisciplinary interaction and shared expertise creating synergies for the development of scientific resources (data, models, methods) to model the impacts of climate change on agriculture and related issues. This objective encompasses a wide range of political and sociological aspects, as well as the technical development of modelling capacity through impact assessments at different scales and assessing uncertainties in model outcomes. We achieve this through model intercomparisons and model improvements, harmonization and exchange of data sets, training in the selection and use of models, assessment of benefits of ensemble modelling, and cross-disciplinary linkages of models and tools. The project engages with a diverse range of stakeholder groups and to support the development of resources for capacity building of individuals and countries. Commensurate with this broad challenge, a network of currently 300 scientists (measured by the number of individuals on the central e-mail list) from 18 countries evolved from the original set of research groups selected by FACCE. In the spirit of creating and maintaining a network for intra- and interdisciplinary knowledge exchange, network activities focused on meetings of researchers for sharing expertise and, depending on group resources (both financial and personnel), development of collaborative research activities. The outcome of these activities is the enhanced knowledge of the individual researchers within the network, contributions to conference presentations and scholarly papers, input to stakeholders and the general public, organised courses for students, junior and senior scientists. The most visible outcome are the scientific results of the network activities, represented in the contributions of MACSUR members to the impressive number of more than 200 collaborative papers in peer-reviewed publications. Here, we present a selection of overview and cross-disciplinary papers which include contributions from MACSUR members. It highlights the major scientific challenges addressed, and the methodological solutions and insights obtained. Over and above these highlights, major achievements have been reached regarding data collection, data processing, evaluation, model testing, modelling assessments of the effects of agriculture on ecosystem services, policy, and development of scenarios. Details on these achievements in the context of MACSUR can be found in our online publication FACCE MACSUR Reports at http://ojs.macsur.eu.
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Scollan, N., Bannink, A., Kipling, R., Saetnan, E., & Van Middelkoop, J. (2015). Livestock and feed production, especially dairy and beef. In FACCE MACSUR Reports (Vol. 6, pp. Sp6–3). Brussels.
Abstract: Improving health and welfare is an important adaptation and mitigation strategyDeveloping process based modelling, responsive to adaptationLinks to climate and land use change modelling are essential Livestock systems likely to be hit hardest by climate changeNeed to develop animal health models that respond to adaptation by farmersBringing together direct and indirect impacts of climate change vitalAdaptation and mitigation need to be considered and modelled togetherLinking models across scales is important to support policy decisionsLearning between sectors carries potential for novel solutions and methodological advancesEffective communication of outcomes to stakeholders (how?) No Label
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Köchy, M., Bannink, A., Banse, M., Brouwer, F., Brüser, K., Ewert, F., et al. (2015). MACSUR Phase 1 Final Administrative Report: Public release (Vol. 6).
Abstract: MACSUR’s foremost charge is improving the methodology for integrative inter-disciplinary modelling of European agriculture. In addition to technical changes, improvements include the involvement of stakeholders for setting research priorities, scenarios (if-then evaluations), and model parameters to more realistic or region-specific values. The Knowledge Hub currently brings together 300 members from 18 countries and has generated 300 scientific papers, over 500 presentations and 20 workshops and conferences within the first three years. Scientific results are communicated in conferences and workshops, where policymakers take part by invitation or because of professional interest. These events also provide opportunities for direct dialogues between policymakers and scientists. The primary form of output of the research network is scientific publications that are cited in policy documents by relevant administrative departments, ministries, intergovernmental agencies, and directorate-generals, and non-governmental interest groups. MACSUR members also contribute directly to policy documents as authors, e.g. the EEA’s indicator report on CC impacts or the IPCC’s 5th assessment report’s chapter on food security.
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