| Records |
| Author |
Bannink, A.; van Lingen, H.J.; Ellis, J.L.; France, J.; Dijkstra, J. |
| Title |
The contribution of mathematical modeling to understanding dynamic aspects of rumen metabolism |
Type |
Journal Article |
| Year |
2016 |
Publication |
Frontiers in Microbiology |
Abbreviated Journal |
Frontiers in Microbiology |
| Volume |
7 |
Issue |
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Pages |
1820 |
Keywords  |
lactating dairy-cows; milk urea concentration; fatty-acid production; ruminal fermentation; mechanistic model; holstein cows; beef-cattle; stoichiometric parameters; methane production; feeding frequency |
| Abstract |
All mechanistic rumen models cover the main drivers of variation in rumen function, which are feed intake, the differences between feedstuffs and feeds in their intrinsic rumen degradation characteristics, and fractional outflow rate of fluid and particulate matter. Dynamic modeling approaches are best suited to the prediction of more nuanced responses in rumen metabolism, and represent the dynamics of the interactions between substrates and micro-organisms and inter-microbial interactions. The concepts of dynamics are discussed for the case of rumen starch digestion as influenced by starch intake rate and frequency of feed intake, and for the case of fermentation of fiber in the large intestine. Adding representations of new functional classes of micro-organisms (i.e., with new characteristics from the perspective of whole rumen function) in rumen models only delivers new insights if complemented by the dynamics of their interactions with other functional classes. Rumen fermentation conditions have to be represented due to their profound impact on the dynamics of substrate degradation and microbial metabolism. Although the importance of rumen pH is generally acknowledged, more emphasis is needed on predicting its variation as well as variation in the processes that underlie rumen fluid dynamics. The rumen wall has an important role in adapting to rapid changes in the rumen environment, clearing of volatile fatty acids (VFA), and maintaining rumen pH within limits. Dynamics of rumen wall epithelia and their role in VFA absorption needs to be better represented in models that aim to predict rumen responses across nutritional or physiological states. For a detailed prediction of rumen N balance there is merit in a dynamic modeling approach compared to the static approaches adopted in current protein evaluation systems. Improvement is needed on previous attempts to predict rumen VFA profiles, and this should be pursued by introducing factors that relate more to microbial metabolism. For rumen model construction, data on rumen microbiomes are preferably coupled with knowledge consolidated in rumen models instead of relying on correlations with rather general aspects of treatment or animal. This helps to prevent the disregard of basic principles and underlying mechanisms of whole rumen function. |
| Address |
2017-01-06 |
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Place of Publication |
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| Language |
English |
Summary Language |
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Original Title |
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Series Title |
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Abbreviated Series Title |
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| Series Volume |
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Series Issue |
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Edition |
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| ISSN |
1664-302x |
ISBN |
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Medium |
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Expedition |
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Conference |
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| Notes |
LiveM, ft_MACSUR |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4932 |
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| Author |
Stefańczyk, E.; Sobkowiak, S.; Brylińska, M.; Śliwka, J. |
| Title |
Diversity of Fusarium spp. associated with dry rot of potato tubers in Poland |
Type |
Journal Article |
| Year |
2016 |
Publication |
European Journal of Plant Pathology |
Abbreviated Journal |
Eur. J. Plant Pathol. |
| Volume |
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Issue |
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Pages |
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| Keywords |
ITS; mycotoxin; pathogenicity; Solanum tuberosum; tef-1α; β-tubulin; sequence data; Trichothecenes; identification; fungus; pathogenicity; temperature; sensitivity; zearalenone; strains; disease |
| Abstract |
Fusarium spp. belong to the division Ascomycota and cause important plant diseases; these fungi may contaminate food products with mycotoxins, endangering human and animal health. Several Fusarium spp. have been associated with potato dry rot. The most frequent and devastating of these species are F. sambucinum, F. solani and F. oxysporum, depending on the geographic location and the season. Samples of potato tubers with dry rot symptoms were collected, and their putative fungal isolates were identified as Fusarium species using partial nucleotide sequences of the internal transcribed spacer, translation elongation factor 1-α and β-tubulin genes. Among 149 isolates, 12 species were identified. F. oxysporum was the most frequent (45 % of the isolates), followed by F. avenaceum (12.1 %), F. solani (10.7 %) and F. sambucinum (7.4 %). Phylogenetic analyses confirmed the species identifications and revealed a high diversity of F. solani and a low diversity of F. oxysporum. Potential producers of zearalenone and trichothecenes were identified within the obtained isolates using PCR markers. Isolates that were pathogenic to potatoes in laboratory tests were found in four species: F. sambucinum, F. avenaceum, F. culmorum, and F. graminearum. The effects of increased temperature and mixed inoculum on the pathogenicities of chosen species were evaluated. This study adds 434 potato-derived Fusarium sequences to the NCBI GenBank database and demonstrates that the list of Fusarium species and mycotoxins present in potato tubers may be richer than previously believed, regardless of whether these species cause dry rot or live as saprophytes. |
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English |
Summary Language |
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| ISSN |
0929-1873 1573-8469 |
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Article |
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Conference |
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| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4721 |
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| Author |
Schönhart, M.; Schauppenlehner, T.; Kuttner, M.; Kirchner, M.; Schmid, E. |
| Title |
Climate change impacts on farm production, landscape appearance, and the environment: Policy scenario results from an integrated field-farm-landscape model in Austria |
Type |
Journal Article |
| Year |
2016 |
Publication |
Agricultural Systems |
Abbreviated Journal |
Agricultural Systems |
| Volume |
145 |
Issue |
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Pages |
39-50 |
| Keywords |
Integrated land use modeling; Climate change impacts; Mitigation; Adaptation; Field-farm-landscape; Environment; agricultural landscapes; land-use; netherlands; adaptation; indicators; management; responses |
| Abstract |
Climate change is among the major drivers of agricultural land use change and demands autonomous farm adaptation as well as public mitigation and adaptation policies. In this article, we present an integrated land use model (ILM) mainly combining a bio-physical model and a bio-economic farm model at field, farm and landscape levels. The ILM is applied to a cropland dominated landscape in Austria to analyze impacts of climate change and mitigation and adaptation policy scenarios on farm production as well as on the abiotic environment and biotic environment. Changes in aggregated total farm gross margins from three climate change scenarios for 2040 range between + 1% and + 5% without policy intervention” and compared to a reference situation under the current climate. Changes in aggregated gross margins are even higher if adaptation policies are in place. However, increasing productivity from climate change leads to deteriorating environmental conditions such as declining plant species richness and landscape appearance. It has to be balanced by mitigation and adaptation policies taking into account effects from the considerable spatial heterogeneity such as revealed by the ILM. (C) 2016 Elsevier Ltd. All rights reserved. |
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English |
Summary Language |
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Original Title |
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Abbreviated Series Title |
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| Series Volume |
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Series Issue |
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Edition |
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| ISSN |
0308-521x |
ISBN |
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Article |
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Conference |
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| Notes |
CropM, TradeM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4767 |
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| Author |
Maiorano, A.; Martre, P.; Asseng, S.; Ewert, F.; Müller, C.; Rötter, R.P.; Ruane, A.C.; Semenov, M.A.; Wallach, D.; Wang, E.; Alderman, P.D.; Kassie, B.T.; Biernath, C.; Basso, B.; Cammarano, D.; Challinor, A.J.; Doltra, J.; Dumont, B.; Rezaei, E.E.; Gayler, S.; Kersebaum, K.C.; Kimball, B.A.; Koehler, A.-K.; Liu, B.; O’Leary, G.J.; Olesen, J.E.; Ottman, M.J.; Priesack, E.; Reynolds, M.; Stratonovitch, P.; Streck, T.; Thorburn, P.J.; Waha, K.; Wall, G.W.; White, J.W.; Zhao, Z.; Zhu, Y. |
| Title |
Crop model improvement reduces the uncertainty of the response to temperature of multi-model ensembles |
Type |
Journal Article |
| Year |
2016 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
| Volume |
202 |
Issue |
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Pages |
5-20 |
| Keywords |
Impact uncertainty; High temperature; Model improvement; Multi-model ensemble; Wheat crop model |
| Abstract |
To improve climate change impact estimates and to quantify their uncertainty, multi-model ensembles (MMEs) have been suggested. Model improvements can improve the accuracy of simulations and reduce the uncertainty of climate change impact assessments. Furthermore, they can reduce the number of models needed in a MME. Herein, 15 wheat growth models of a larger MME were improved through re-parameterization and/or incorporating or modifying heat stress effects on phenology, leaf growth and senescence, biomass growth, and grain number and size using detailed field experimental data from the USDA Hot Serial Cereal experiment (calibration data set). Simulation results from before and after model improvement were then evaluated with independent field experiments from a CIMMYT world-wide field trial network (evaluation data set). Model improvements decreased the variation (10th to 90th model ensemble percentile range) of grain yields simulated by the MME on average by 39% in the calibration data set and by 26% in the independent evaluation data set for crops grown in mean seasonal temperatures >24 °C. MME mean squared error in simulating grain yield decreased by 37%. A reduction in MME uncertainty range by 27% increased MME prediction skills by 47%. Results suggest that the mean level of variation observed in field experiments and used as a benchmark can be reached with half the number of models in the MME. Improving crop models is therefore important to increase the certainty of model-based impact assessments and allow more practical, i.e. smaller MMEs to be used effectively. |
| Address |
2016-09-13 |
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Language |
Summary Language |
Newsletter July 2016 |
Original Title |
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Series Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
0378-4290 |
ISBN |
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Article |
| Area |
CropM |
Expedition |
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Conference |
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| Notes |
CropMwp;wos; ft=macsur; wsnot_yet; |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4776 |
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| Author |
Carabano, M.J.; Logar, B.; Bormann, J.; Minet, J.; Vanrobays, M.L.; Diaz, C.; Tychon, B.; Gengler, N.; Hammami, H. |
| Title |
Modeling heat stress under different environmental conditions |
Type |
Journal Article |
| Year |
2016 |
Publication |
Journal of Dairy Science |
Abbreviated Journal |
J. Dairy Sci. |
| Volume |
99 |
Issue |
5 |
Pages |
3798-3814 |
| Keywords |
Holstein cattle; heat stress model; climate change; somatic-cell score; lactating dairy-cows; dry-matter intake; milk-production; temperate climate; production traits; holstein cows; cattle; yield; weather; Agriculture; Food Science & Technology |
| Abstract |
Renewed interest in heat stress effects on livestock productivity derives from climate change, which is expected to increase temperatures and the frequency of extreme weather events. This study aimed at evaluating the effect of temperature and humidity on milk production in highly selected dairy cattle populations across 3 European regions differing in climate and production systems to detect differences and similarities that can be used to optimize heat stress (HS) effect modeling. Milk, fat, and protein test day data from official milk recording for 1999 to 2010 in 4 Holstein populations located in the Walloon Region of Belgium (BEL), Luxembourg (LUX), Slovenia (SLO), and southern Spain (SPA) were merged with temperature and humidity data provided by the state meteorological agencies. After merging, the number of test day records/cows per trait ranged from 686,726/49,655 in SLO to 1,982,047/136,746 in BEL. Values for the daily average and maximum temperature-humidity index (THIavg and THImax) ranges for THIavg/THImax were largest in SLO (22-74/28-84) and shortest in SPA (39-76/46-83). Change point techniques were used to determine comfort thresholds, which differed across traits and climatic regions. Milk yield showed an inverted U-shaped pattern of response across the THI scale with a HS threshold around 73 THImax units. For fat and protein, thresholds were lower than for milk yield and were shifted around 6 THI units toward larger values in SPA compared with the other countries. Fat showed lower HS thresholds than protein traits in all countries. The traditional broken line model was compared with quadratic and cubic fits of the pattern of response in production to increasing heat loads. A cubic polynomial model allowing for individual variation in patterns of response and THIavg as heat load measure showed the best statistical features. Higher/lower producing animals showed less/more persistent production (quantity and quality) across the THI scale. The estimated correlations between comfort and THIavg values of 70 (which represents the upper end of the THIavg scale in BEL-LUX) were lower for BEL-LUX (0.70-0.80) than for SPA (0.83-0.85). Overall, animals producing in the more temperate climates and semi-extensive grazing systems of BEL and LUX showed HS at lower heat loads and more re-ranking across the THI scale than animals producing in the warmer climate and intensive indoor system of SPA. |
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English |
Summary Language |
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Original Title |
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Series Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
0022-0302 |
ISBN |
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Article |
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| Notes |
LiveM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4745 |
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