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Author  |
Wallach, D.; Nissanka, S.P.; Karunaratne, A.S.; Weerakoon, W.M.W.; Thorburn, P.J.; Boote, K.J.; Jones, J.W. |
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Title |
Accounting for both parameter and model structure uncertainty in crop model predictions of phenology: A case study on rice |
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Journal Article |
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Year |
2016 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
European Journal of Agronomy |
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Keywords |
Uncertainty; Phenology; Parameter uncertainty; Multi-model ensemble; Generalized least squares; Rice; Crop model; APSIM; DSSAT |
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Abstract |
We consider predictions of the impact of climate warming on rice development times in Sri Lanka. The major emphasis is on the uncertainty of the predictions, and in particular on the estimation of mean squared error of prediction. Three contributions to mean squared error are considered. The first is parameter uncertainty that results from model calibration. To take proper account of the complex data structure, generalized least squares is used to estimate the parameters and the variance-covariance matrix of the parameter estimators. The second contribution is model structure uncertainty, which we estimate using two different models. An ANOVA analysis is used to separate the contributions of parameter and model uncertainty to mean squared error. The third contribution is model error, which is estimated using hindcasts. Mean squared error of prediction of time from emergence to maturity, for baseline +2 °C, is estimated as 108 days2, with model error contributing 86 days2, followed by model structure uncertainty which contributes 15 days2 and parameter uncertainty which contributes 7 days2. We also show how prediction uncertainty is reduced if prediction concerns development time averaged over years, or the difference in development time between baseline and warmer temperatures. |
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2016-09-13 |
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ISSN |
1161-0301 |
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Article |
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CropM |
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CropM; wos; ftnotmacsur; wsnotyet; |
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Call Number |
MA @ admin @ |
Serial |
4777 |
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Author |
Wallach, D.; Mearns, L.O.; Ruane, A.C.; Rötter, R.P.; Asseng, S. |
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Title |
Lessons from climate modeling on the design and use of ensembles for crop modeling |
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Journal Article |
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Year |
2016 |
Publication |
Climatic Change |
Abbreviated Journal |
Clim. Change |
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Keywords |
Model ensembles; Crop models; Climate models; Model weighting; Super ensembles |
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Abstract |
Working with ensembles of crop models is a recent but important development in crop modeling which promises to lead to better uncertainty estimates for model projections and predictions, better predictions using the ensemble mean or median, and closer collaboration within the modeling community. There are numerous open questions about the best way to create and analyze such ensembles. Much can be learned from the field of climate modeling, given its much longer experience with ensembles. We draw on that experience to identify questions and make propositions that should help make ensemble modeling with crop models more rigorous and informative. The propositions include defining criteria for acceptance of models in a crop MME, exploring criteria for evaluating the degree of relatedness of models in a MME, studying the effect of number of models in the ensemble, development of a statistical model of model sampling, creation of a repository for MME results, studies of possible differential weighting of models in an ensemble, creation of single model ensembles based on sampling from the uncertainty distribution of parameter values or inputs specifically oriented toward uncertainty estimation, the creation of super ensembles that sample more than one source of uncertainty, the analysis of super ensemble results to obtain information on total uncertainty and the separate contributions of different sources of uncertainty and finally further investigation of the use of the multi-model mean or median as a predictor. |
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English |
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0165-0009 1573-1480 |
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Review |
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CropM |
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CropM; wos; ft=macsur; wsnotyet; |
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MA @ admin @ |
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4781 |
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Author |
Wallach, D.; Mearns, L.O.; Ruane, A.C.; Rötter, R.P.; Asseng, S. |
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Title |
Lessons from climate modeling on the design and use of ensembles for crop modeling |
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Journal Article |
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Year |
2016 |
Publication |
Climatic Change |
Abbreviated Journal |
Clim. Change |
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139 |
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3-4 |
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551-564 |
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Keywords |
change projections; elevated CO2; uncertainty; wheat; water; soil; simulations; yield; rice; 21st-century; Model ensembles; Crop models; Climate models; Model weighting; Super ensembles |
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Abstract |
Working with ensembles of crop models is a recent but important development in crop modeling which promises to lead to better uncertainty estimates for model projections and predictions, better predictions using the ensemble mean or median, and closer collaboration within the modeling community. There are numerous open questions about the best way to create and analyze such ensembles. Much can be learned from the field of climate modeling, given its much longer experience with ensembles. We draw on that experience to identify questions and make propositions that should help make ensemble modeling with crop models more rigorous and informative. The propositions include defining criteria for acceptance of models in a crop MME, exploring criteria for evaluating the degree of relatedness of models in a MME, studying the effect of number of models in the ensemble, development of a statistical model of model sampling, creation of a repository for MME results, studies of possible differential weighting of models in an ensemble, creation of single model ensembles based on sampling from the uncertainty distribution of parameter values or inputs specifically oriented toward uncertainty estimation, the creation of super ensembles that sample more than one source of uncertainty, the analysis of super ensemble results to obtain information on total uncertainty and the separate contributions of different sources of uncertainty and finally further investigation of the use of the multi-model mean or median as a predictor. |
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2017-01-06 |
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English |
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0165-0009 |
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CropM, ft_MACSUR |
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Call Number |
MA @ admin @ |
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4933 |
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Author |
Walkiewicz, A.; Bulak, P.; Brzezinska, M.; Wnuk, E.; Bieganowski, A. |
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Title |
Methane oxidation in heavy metal contaminated Mollic Gleysol under oxic and hypoxic conditions |
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Journal Article |
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Year |
2016 |
Publication |
Environmental Pollution |
Abbreviated Journal |
Environ. Pollut. |
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213 |
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403-411 |
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Keywords |
Soil; Methane oxidation; CH4; Heavy metals; Oxygen status; Dehydrogenase; activity; methanotrophic bacteria; dehydrogenase-activity; potential activity; forest soils; responses; landfill; community; ch4; co2; bioremediation |
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Soils are the largest terrestrial sink for methane (CH4). However, heavy metals may exert toxicity to soil microorganisms, including methanotrophic bacteria. We tested the effect of lead (Pb), zinc (Zn) and nickel (Ni) on CH4 oxidation (1% v/v) and dehydrogenase activity, an index of the activity of the total soil microbial community in Mollic Gleysol soil in oxic and hypoxic conditions (oxia and hypoxia, 20% and 10% v/v O2, respectively). Metals were added in doses corresponding to the amounts permitted of Pb, Zn, Ni in agricultural soils (60, 120, 35 mg kg(-1), respectively), and half and double of these doses. Relatively low metal contents and O2 status reflect the conditions of most agricultural soils of temperate regions. Methane consumption showed high tolerance to heavy metals. The effect of O2 status was stronger than that of metals. CH4 consumption was enhanced under hypoxia, where both the start and the completion of the control and contaminated treatment were faster than under oxic conditions. Dehydrogenase activity, showed higher sensitivity to the contamination (except for low Ni dose), with a stronger effect of heavy metals, than that of the O2 status. |
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English |
Summary Language |
Newsletter July 2016 |
Original Title |
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0269-7491 |
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CropM, ft_macsur |
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MA @ admin @ |
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4771 |
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Author |
Vitti, C.; Stellacci, A.M.; Leogrande, R.; Mastrangelo, M.; Cazzato, E.; Ventrella, D. |
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Title |
Assessment of organic carbon in soils: a comparison between the Springer–Klee wet digestion and the dry combustion methods in Mediterranean soils (Southern Italy) |
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Journal Article |
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Year |
2016 |
Publication |
Catena |
Abbreviated Journal |
Catena |
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137 |
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113-119 |
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• Comparison of two methods for soil organic C quantification is presented. • Springer–Klee wet digestion and dry combustion with automated analyser were compared. • Soil samples were collected from three different sites in a Southern Italy area. • Recoveries close to one were observed for whole dataset and for data grouped per site. • The strong agreement between the methods would enable direct comparison of results. Abstract Soil organic carbon (SOC) is the largest carbon pool in the terrestrial biosphere and it is among the most important factors responsible for conservation of soil quality. Automated dry combustion techniques are gradually replacing traditional quantification methods based on wet digestion chemistry. Critical comparison of different methods is fundamental to reevaluate archives of SOC data and accurately assess and model long-term carbon stock variation and should be performed for different soil types and management conditions. Two analytical methods, the Springer–Klee wet digestion and the dry combustion using an automated analyser, were compared for soils typical of a Mediterranean environment in Southern Italy. Soil samples were collected from three sites, at two depths. Soils were fine textured (from clay–loam to clay) with total carbonate ranging from 6.6 to 16.7 g 100 g− 1. SOC content varied from 6.92 to 28.86 g kg− 1 (as average of the two methods), with values and ranges typical of Southern Europe. On average, Springer–Klee method gave slightly higher values and showed greater data variability. This behaviour, in agreement with other studies, can be attributed to the reaction of K2Cr2O7 with other soil constituents and to analytical constraints. Our results suggest high consistency between Springer–Klee and dry combustion techniques and show recoveries close to one both for the whole dataset and for data grouped per experimental site or soil depth. Linear regression equations between the two methods were slightly affected by different soil types (P = 0.0621). The best fitting of the relationship was a linear regression passing through the origin for the whole dataset (Radj2 = 0.965; RPD = 3.41). The strong overall agreement observed between the two methods would enable the direct comparison of new data set with those already existing in Southern Italy for soils with similar characteristics. |
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0341-8162 |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4989 |
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