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Author  |
De Swaef, T.; Bellocchi, G.; Aper, J.; Lootens, P.; Roldan-Ruiz, I. |
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Title |
Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality |
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Journal Article |
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Year |
2019 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
70 |
Issue |
9 |
Pages |
2587-2604 |
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Keywords |
Breeding; grassland modelling; identifiability analysis; perennial; ryegrass; phenotyping; sensitivity analysis; pasture simulation-model; practical identifiability; crop; water; parameters; systems; carbon; uncertainty; sensitivity; emissions |
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Abstract |
Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized. |
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2020-02-14 |
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English |
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0022-0957 |
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Article |
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LiveM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
5231 |
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Author |
Dietrich, J.P.; Popp, A.; Lotze-Campen, H. |
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Title |
Reducing the loss of information and gaining accuracy with clustering methods in a global land-use model |
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Journal Article |
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Year |
2013 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
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Volume |
263 |
Issue |
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Pages |
233-243 |
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Keywords |
aggregation; downscaling; clustering; information conservation; land use model; scale; scales; agriculture; simulation; dynamics; pattern |
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Abstract |
Global land-use models have to deal with processes on several spatial scales, ranging from the global scale down to the farm level. The increasing complexity of modern land-use models combined with the problem of limited computational resources represents a challenge to modelers. One solution of this problem is to perform spatial aggregation based on a regular grid or administrative units such as countries. Unfortunately this type of aggregation flattens many regional differences and produces a homogenized map of the world. In this paper we present an alternative aggregation approach using clustering methods. Clustering reduces the loss of information due to aggregation by choosing an appropriate aggregation pattern. We investigate different clustering methods, examining their quality in terms of information conservation. Our results indicate that clustering is always a good choice and preferable compared to grid-based aggregation. Although all the clustering methods we tested delivered a higher degree of information conservation than grid-based aggregation, the choice of clustering method is not arbitrary. Comparing outputs of a model fed with original data and a model fed with aggregated data, bottom-up clustering delivered the best results for the whole range of numbers of clusters tested. (C) 2013 Elsevier B.V. All rights reserved. |
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0304-3800 |
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TradeM |
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Call Number |
MA @ admin @ |
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4488 |
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Author |
Doltra, J.; Olesen, J.E.; Báez, D.; Louro, A.; Chirinda, N. |
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Title |
Modeling nitrous oxide emissions from organic and conventional cereal-based cropping systems under different management, soil and climate factors |
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Journal Article |
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Year |
2015 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
European Journal of Agronomy |
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Volume |
66 |
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Pages |
8-20 |
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Keywords |
greenhouse gas emissions; nitrogen losses; fasset process-based model; mitigation; crop management; n2o emissions; agricultural soils; cover crops; simulation; matter; wheat; uncertainty; variability; fertilizer; rotation |
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Abstract |
Mitigation of greenhouse gas emissions from agriculture should be assessed across cropping systems and agroclimatic regions. In this study, we investigate the ability of the FASSET model to analyze differences in the magnitude of N2O emissions due to soil, climate and management factors in cereal-based cropping systems. Forage maize was grown in a conventional dairy system at Mabegondo (NW Spain) and wheat and barley in organic and conventional crop rotations at Foulum (NW Denmark). These two European sites represent agricultural areas with high and low to moderate emission levels, respectively. Field trials included plots with and without catch crops that were fertilized with either mineral N fertilizer, cattle slurry, pig slurry or digested manure. Non-fertilized treatments were also included. Measurements of N2O fluxes during the growing cycle of all the crops at both sites were performed with the static chamber method with more frequent measurements post-fertilization and biweekly measurements when high fluxes were not expected. All cropping systems were simulated with the FASSET version 2.5 simulation model. Cumulative soil seasonal N2O emissions were about ten-fold higher at Mabegondo than at Foulum when averaged across systems and treatments (8.99 and 0.71 kg N2O-N ha(-1), respectively). The average simulated cumulative soil N2O emissions were 9.03 and 1.71 kg N2O-N ha(-1) at Mabegondo and at Foulum, respectively. Fertilization, catch crops and cropping systems had lower influence on the seasonal soil N2O fluxes than the environmental factors. Overall, in its current version FASSET reproduced the effects of the different factors investigated on the cumulative seasonal soil N2O emissions but temporally it overestimated emissions from nitrification and denitrification on particular days when soil operations, ploughing or fertilization, took place. The errors associated with simulated daily soil N2O fluxes increased with the magnitude of the emissions. For resolving causes of differences in simulated and measured fluxes more intensive and temporally detailed measurements of N2O fluxes and soil C and N dynamics would be needed. (C) 2015 Elsevier B.V. All rights reserved. |
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English |
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ISSN |
1161-0301 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4748 |
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Author |
Doro, L.; Jones, C.; Williams, J.R.; Norfleet, M.L.; Izaurralde, R.C.; Wang, X.; Jeong, J. |
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Title |
The Variable Saturation Hydraulic Conductivity Method for Improving Soil Water Content Simulation in EPIC and APEX Models |
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Journal Article |
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Year |
2017 |
Publication |
Vadose Zone Journal |
Abbreviated Journal |
Vadose Zone Journal |
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Volume |
16 |
Issue |
13 |
Pages |
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Keywords |
Conservation Effects Assessment; Runoff Simulation; Unsaturated Soils; United-States; Porous-Media; Moisture; Flow; Productivity; Transport; Denitrification |
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Abstract |
Soil water percolation is a key process in the life cycle of water in fields, watersheds, and river basins. The Environmental Policy Integrated Climate (EPIC) and the Agricultural Policy/Environmental eXtender (APEX) are continuous models developed for evaluating the environmental effects of agricultural management. Traditionally, these models have simulated soil water percolation processes using a tipping-bucket approach, with the rate of flow limited by the saturated hydraulic conductivity. This simple approach often leads to inaccuracy in simulating elevated soil water conditions where soil water content (SWC) levels may remain above field capacity under prolonged wet weather periods or limited drainage. To overcome this deficiency, a new sub-model, the variable saturation hydraulic conductivity (VSHC) method, was developed for simulating soil water percolation processes using a nonlinear equation to estimate the effective hydraulic conductivity as a function of the SWC and soil properties. The VSHC method was evaluated at three sites in the United States and two sites in Europe. In addition, a numerical solution of the Richards equation was used as a benchmark for SWC comparison. Results show that the VSHC method substantially improves the accuracy of the SWC simulation in long-term simulations, particularly during wet periods. At the watershed scale, results on the Riesel Y2 watershed indicate that the VSHC method enhances model performance in the high-flow regime of channel peak flows because of the improved estimation of SWC, which implies that the improved SWC simulation at the field scale is beneficial to hydrologic modeling at the watershed scale. |
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2018-09-07 |
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English |
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ISSN |
1539-1663 |
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Notes |
CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
5208 |
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Author |
Dumont, B.; Basso, B.; Bodson, B.; Destain, J.-P.; Destain, M.-F. |
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Title |
Assessing and modeling economic and environmental impact of wheat nitrogen management in Belgium |
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Journal Article |
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Year |
2016 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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79 |
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184-196 |
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Keywords |
Tactical nitrogen management; Climatic variability; Probability risk; assessment; LARS-WG; Crop model; STICS; stics crop model; generic model; simulation; yield; water; soil; fertilizer; behavior; climate; maize |
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Abstract |
Future progress in wheat yield will rely on identifying genotypes & management practices better adapted to the fluctuating environment Nitrogen (N) fertilization is probably the most important practice impacting crop growth. However, the adverse environmental impacts of inappropriate N management (e.g., lixiviation) must be considered in the decision-making process. A formal decisional algorithm was developed to tactically optimize the economic & environmental N fertilization in wheat. Climatic uncertainty analysis was performed using stochastic weather time-series (LARS-WG). Crop growth was simulated using STICS model. Experiments were conducted to support the algorithm recommendations: winter wheat was sown between 2008 & 2014 in a classic loamy soil of the Hesbaye Region, Belgium (temperate climate). Results indicated that, most of the time, the third N fertilization applied at flag-leaf stage by farmers could be reduced. Environmental decision criterion is most of the time the limiting factor in comparison to the revenues expected by farmers. (C) 2016 Elsevier Ltd. All rights reserved. |
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ISSN |
1364-8152 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4749 |
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