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Dumont, B.; Leemans, V.; Mansouri, M.; Bodson, B.; Destain, J.-P.; Destain, M.-F. |
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Title  |
Parameter identification of the STICS crop model, using an accelerated formal MCMC approach |
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Journal Article |
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Year |
2014 |
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Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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52 |
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121-135 |
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Keywords |
crop model; parameter estimation; bayes; stics; dream; global sensitivity-analysis; simulation-model; nitrogen balances; bayesian-approach; generic model; wheat; prediction; water; optimization; algorithm |
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This study presents a Bayesian approach for the parameters’ identification of the STICS crop model based on the recently developed Differential Evolution Adaptive Metropolis (DREAM) algorithm. The posterior distributions of nine specific crop parameters of the STICS model were sampled with the aim to improve the growth simulations of a winter wheat (Triticum aestivum L) culture. The results obtained with the DREAM algorithm were initially compared to those obtained with a Nelder-Mead Simplex algorithm embedded within the OptimiSTICS package. Then, three types of likelihood functions implemented within the DREAM algorithm were compared, namely the standard least square, the weighted least square, and a transformed likelihood function that makes explicit use of the coefficient of variation (CV). The results showed that the proposed CV likelihood function allowed taking into account both noise on measurements and heteroscedasticity which are regularly encountered in crop modelling. (C) 2013 Elsevier Ltd. All rights reserved. |
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1364-8152 |
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MA @ admin @ |
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4520 |
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Rötter, R.P.; Palosuo, T.; Kersebaum, K.C.; Angulo, C.; Bindi, M.; Ewert, F.; Ferrise, R.; Hlavinka, P.; Moriondo, M.; Nendel, C.; Olesen, J.E.; Patil, R.H.; Ruget, F.; Takác, J.; Trnka, M. |
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Title |
Simulation of spring barley yield in different climatic zones of Northern and Central Europe: A comparison of nine crop models |
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Journal Article |
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Year |
2012 |
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Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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133 |
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23-36 |
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Keywords |
climate; crop growth simulation; model comparison; spring barley; yield variability; uncertainty; change impacts; nitrogen dynamics; high-temperature; soil-moisture; elevated co2; ceres-wheat; data set; growth; drought; sensitivity |
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In this study, the performance of nine widely used and accessible crop growth simulation models (APES-ACE, CROPSYST, DAISY, DSSAT-CERES, FASSET, HERMES, MONICA, STICS and WOFOST) was compared during 44 growing seasons of spring barley (Hordeum vulgare L) at seven sites in Northern and Central Europe. The aims of this model comparison were to examine how different process-based crop models perform at multiple sites across Europe when applied with minimal information for model calibration of spring barley at field scale, whether individual models perform better than the multi-model mean, and what the uncertainty ranges are in simulated grain yields. The reasons for differences among the models and how results for barley compare to winter wheat are discussed. Regarding yield estimation, best performing based on the root mean square error (RMSE) were models HERMES, MONICA and WOFOST with lowest values of 1124, 1282 and 1325 (kg ha(-1)), respectively. Applying the index of agreement (IA), models WOFOST, DAISY and HERMES scored best having highest values (0.632, 0.631 and 0.585, respectively). Most models systematically underestimated yields, whereby CROPSYST showed the highest deviation as indicated by the mean bias error (MBE) (-1159 kg ha(-1)). While the wide range of simulated yields across all sites and years shows the high uncertainties in model estimates with only restricted calibration, mean predictions from the nine models agreed well with observations. Results of this paper also show that models that were more accurate in predicting phenology were not necessarily the ones better estimating grain yields. Total above-ground biomass estimates often did not follow the patterns of grain yield estimates and, thus, harvest indices were also different. Estimates of soil moisture dynamics varied greatly. In comparison, even though the growing cycle for winter wheat is several months longer than for spring barley, using RMSE and IA as indicators, models performed slightly, but not significantly, better in predicting wheat yields. Errors in reproducing crop phenology were similar, which in conjunction with the shorter growth cycle of barley has higher effects on accuracy in yield prediction. (C) 2012 Elsevier B.V. All rights reserved. |
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2016-10-31 |
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0378-4290 |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4803 |
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Rötter, R.P.; Palosuo, T.; Kersebaum, K.-C.; Angulo, C.; Bindi, M.; Ewert, F.; Ferrise, R.; Hlavinka, P.; Moriondo, M.; Olesen, J.E.; Takáč, J.; Trnka, M. |
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Title |
Simulation of spring barley yield in different climatic zones of Northern and Central Europe: A comparison of nine crop models |
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Journal Article |
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Year |
2012 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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Volume |
133 |
Issue |
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Pages |
23-36 |
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Keywords |
Climate; Crop growth simulation; Model comparison; Spring barley; Yield variability; Uncertainty; change impacts; nitrogen dynamics; high-temperature; soil-moisture; elevated co2; ceres-wheat; data set; growth; drought; sensitivity |
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► We compared nine crop simulation models for spring barley at seven sites in Europe. ► Applying crop models with restricted calibration leads to high uncertainties. ► Multi-crop model mean yield estimates were in good agreement with observations. ► The degree of uncertainty for simulated grain yield of barley was similar to winter wheat. ► We need more suitable data enabling us to verify different processes in the models. In this study, the performance of nine widely used and accessible crop growth simulation models (APES-ACE, CROPSYST, DAISY, DSSAT-CERES, FASSET, HERMES, MONICA, STICS and WOFOST) was compared during 44 growing seasons of spring barley (Hordeum vulgare L) at seven sites in Northern and Central Europe. The aims of this model comparison were to examine how different process-based crop models perform at multiple sites across Europe when applied with minimal information for model calibration of spring barley at field scale, whether individual models perform better than the multi-model mean, and what the uncertainty ranges are in simulated grain yields. The reasons for differences among the models and how results for barley compare to winter wheat are discussed. Regarding yield estimation, best performing based on the root mean square error (RMSE) were models HERMES, MONICA and WOFOST with lowest values of 1124, 1282 and 1325 (kg ha(-1)), respectively. Applying the index of agreement (IA), models WOFOST, DAISY and HERMES scored best having highest values (0.632, 0.631 and 0.585, respectively). Most models systematically underestimated yields, whereby CROPSYST showed the highest deviation as indicated by the mean bias error (MBE) (-1159 kg ha(-1)). While the wide range of simulated yields across all sites and years shows the high uncertainties in model estimates with only restricted calibration, mean predictions from the nine models agreed well with observations. Results of this paper also show that models that were more accurate in predicting phenology were not necessarily the ones better estimating grain yields. Total above-ground biomass estimates often did not follow the patterns of grain yield estimates and, thus, harvest indices were also different. Estimates of soil moisture dynamics varied greatly. In comparison, even though the growing cycle for winter wheat is several months longer than for spring barley, using RMSE and IA as indicators, models performed slightly, but not significantly, better in predicting wheat yields. Errors in reproducing crop phenology were similar, which in conjunction with the shorter growth cycle of barley has higher effects on accuracy in yield prediction. |
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CropM, ftnotmacsur |
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MA @ admin @ |
Serial |
4592 |
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Author |
van Bussel, L.G.J.; Stehfest, E.; Siebert, S.; Müller, C.; Ewert, F. |
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Title |
Simulation of the phenological development of wheat and maize at the global scale |
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Journal Article |
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2015 |
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Global Ecology and Biogeography |
Abbreviated Journal |
Glob. Ecol. Biogeogr. |
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24 |
Issue |
9 |
Pages |
1018-1029 |
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Keywords |
Agricultural management; crop calendars; cultivar; variety characteristics; global crop modelling; global harvest dates; phenology; climate-change; winter-wheat; annual crops; photoperiod sensitivity; geographical variation; temperature; responses; adaptation; cultivars; model |
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AimTo derive location-specific parameters that reflect the geographic differences among cultivars in vernalization requirements, sensitivity to day length (photoperiod) and temperature, which can be used to simulate the phenological development of wheat and maize at the global scale. LocationGlobal. Methods Based on crop calendar observations and literature describing the large-scale patterns of phenological characteristics of cultivars, we developed algorithms to compute location-specific parameters to represent this large-scale pattern. Vernalization requirements were related to the duration and coldness of winter, sensitivity to day length was assumed to be represented by the minimum and maximum day lengths occurring at a location, and sensitivity to temperature was related to temperature conditions during the vegetative development phase of the crop. Results Application of the derived location-specific parameters resulted in high agreement between simulated and observed lengths of the cropping period. Agreement was especially high for wheat, with mean absolute errors of less than 3 weeks. In the main maize cropping regions, cropping periods were over- and underestimated by 0.5-1.5 months. We also found that interannual variability in simulated wheat harvest dates was more realistic when accounting for photoperiod effects. Main conclusions The methodology presented here provides a good basis for modelling the phenological characteristics of cultivars at the global scale. We show that current global patterns of growing season length as described in cropping calendars can be largely reproduced by phenology models if location-specific parameters are derived from temperature and day length indicators. Growing seasons can be modelled more accurately for wheat than for maize, especially in warm regions. Our method for computing parameters for phenology models from temperature and day length offers opportunities to improve the simulation of crop productivity by crop simulation models developed for large spatial areas and for long-term climate impact projections that account for adaptation in the selection of varieties |
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1466-822x |
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CropM, ft_macsur |
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MA @ admin @ |
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4729 |
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Pirttioja, N.; Carter, T.R.; Fronzek, S.; Bindi, M.; Hoffmann, H.; Palosuo, T.; Ruiz-Ramos, M.; Tao, F.; Trnka, M.; Acutis, M.; Asseng, S.; Baranowski, P.; Basso, B.; Bodin, P.; Buis, S.; Cammarano, D.; Deligios, P.; Destain, M.F.; Dumont, B.; Ewert, F.; Ferrise, R.; François, L.; Gaiser, T.; Hlavinka, P.; Jacquemin, I.; Kersebaum, K.C.; Kollas, C.; Krzyszczak, J.; Lorite, I.J.; Minet, J.; Minguez, M.I.; Montesino-San Martin, M.; Moriondo, M.; Müller, C.; Nendel, C.; Öztürk, I.; Perego, A.; Rodríguez, A.; Ruane, A.C.; Ruget, F.; Sanna, M.; Semenov, M.A.; Slawinski, C.; Stratonovitch, P.; Supit, I.; Waha, K.; Wang, E.; Wu, L.; Zhao, Z.; Rötter, R.P. |
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Temperature and precipitation effects on wheat yield across a European transect: a crop model ensemble analysis using impact response surfaces |
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Journal Article |
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2015 |
Publication |
Climate Research |
Abbreviated Journal |
Clim. Res. |
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65 |
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Pages |
87-105 |
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Keywords |
climate; crop model; impact response surface; IRS; sensitivity analysis; wheat; yield; climate-change impacts; uncertainty; 21st-century; projections; simulation; growth; region |
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This study explored the utility of the impact response surface (IRS) approach for investigating model ensemble crop yield responses under a large range of changes in climate. IRSs of spring and winter wheat Triticum aestivum yields were constructed from a 26-member ensemble of process-based crop simulation models for sites in Finland, Germany and Spain across a latitudinal transect. The sensitivity of modelled yield to systematic increments of changes in temperature (-2 to +9°C) and precipitation (-50 to +50%) was tested by modifying values of baseline (1981 to 2010) daily weather, with CO2 concentration fixed at 360 ppm. The IRS approach offers an effective method of portraying model behaviour under changing climate as well as advantages for analysing, comparing and presenting results from multi-model ensemble simulations. Though individual model behaviour occasionally departed markedly from the average, ensemble median responses across sites and crop varieties indicated that yields decline with higher temperatures and decreased precipitation and increase with higher precipitation. Across the uncertainty ranges defined for the IRSs, yields were more sensitive to temperature than precipitation changes at the Finnish site while sensitivities were mixed at the German and Spanish sites. Precipitation effects diminished under higher temperature changes. While the bivariate and multi-model characteristics of the analysis impose some limits to interpretation, the IRS approach nonetheless provides additional insights into sensitivities to inter-model and inter-annual variability. Taken together, these sensitivities may help to pinpoint processes such as heat stress, vernalisation or drought effects requiring refinement in future model development. |
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0936-577x 1616-1572 |
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CropM, ft_macsur |
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MA @ admin @ |
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4662 |
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