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De Swaef, T.; Bellocchi, G.; Aper, J.; Lootens, P.; Roldan-Ruiz, I. |
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Title |
Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality |
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Journal Article |
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Year |
2019 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
70 |
Issue |
9 |
Pages |
2587-2604 |
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Keywords |
Breeding; grassland modelling; identifiability analysis; perennial; ryegrass; phenotyping; sensitivity analysis; pasture simulation-model; practical identifiability; crop; water; parameters; systems; carbon; uncertainty; sensitivity; emissions |
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Abstract |
Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized. |
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2020-02-14 |
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0022-0957 |
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LiveM, ft_macsur |
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MA @ admin @ |
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5231 |
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Eza, U.; Shtiliyanova, A.; Borras, D.; Bellocchi, G.; Carrère, P.; Martin, R. |
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Title |
An open platform to assess vulnerabilities to climate change: An application to agricultural systems |
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Journal Article |
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Year |
2015 |
Publication |
Ecological Informatics |
Abbreviated Journal |
Ecological Informatics |
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30 |
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389-396 |
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Keywords |
climate change; grasslands; modeling platform; vulnerability assessment; pasture simulation-model; software component; solar-radiation; crop production; change impacts; adaptation; indicator; makers |
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Abstract |
Numerous climate futures are now available from global climate models. Translation of climate data such as precipitation and temperatures into ecologically meaningful outputs for managers and planners is the next frontier. We describe a model-based open platform to assess vulnerabilities of agricultural systems to climate change on pixel-wise data. The platform includes a simulation modeling engine and is suited to work with NetCDF format of input and output files. In a case study covering a region (Auvergne) in the Massif Central of France, the platform is configured to characterize climate (occurrence of arid conditions in historical and projected climate records), soils and human management, and is then used to assess the vulnerability to climate change of grassland productivity (downscaled to a fine scale). We demonstrate how using climate time series, and process-based simulations vulnerabilities can be defined at fine spatial scales relevant to farmers and land managers, and can be incorporated into management frameworks. (C) 2015 Elsevier B.V. All rights reserved. |
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1574-9541 |
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CropM LiveM, ft_macsur |
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MA @ admin @ |
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4708 |
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Author |
Gomara, I.; Bellocchi, G.; Martin, R.; Rodriguez-Fonseca, B.; Ruiz-Ramos, M. |
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Title |
Influence of climate variability on the potential forage production of a mown permanent grassland in the French Massif Central |
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Journal Article |
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Year |
2020 |
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Agricultural and Forest Meteorology |
Abbreviated Journal |
Agricultural and Forest Meteorology |
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280 |
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107768 |
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Keywords |
climate variability; grasslands; potential yield; climate services; forage production forecasts; french massif central; pasture simulation-model; dry-matter production; atmospheric; circulation; crop yield; SST anomalies; maize yield; managed grasslands; storm track; ENSO; impacts |
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Climate Services (CS) provide support to decision makers across socio-economic sectors. In the agricultural sector, one of the most important CS applications is to provide timely and accurate yield forecasts based on climate prediction. In this study, the Pasture Simulation model (PaSim) was used to simulate, for the period 1959–2015, the forage production of a mown grassland system (Laqueuille, Massif Central of France) under different management conditions, with meteorological inputs extracted from the SAFRAN atmospheric database. The aim was to generate purely climate-dependent timeseries of optimal forage production, a variable that was maximized by brighter and warmer weather conditions at the grassland. A long-term increase was observed in simulated forage yield, with the 1995–2015 average being 29% higher than the 1959–1979 average. Such increase seems consistent with observed rising trends in temperature and CO2, and multi-decadal changes in incident solar radiation. At interannual timescales, sea surface temperature anomalies of the Mediterranean (MED), Tropical North Atlantic (TNA), equatorial Pacific (El Niño Southern Oscillation) and the North Atlantic Oscillation (NAO) index were found robustly correlated with annual forage yield values. Relying only on climatic predictors, we developed a stepwise statistical multi-regression model with leave-one-out cross-validation. Under specific management conditions (e.g., three annual cuts) and from one to five months in advance, the generated model successfully provided a p-value<0.01 in correlation (t-test), a root mean square error percentage (%RMSE) of 14.6% and a 71.43% hit rate predicting above/below average years in terms of forage yield collection. This is the first modeling study on the possible role of large-scale oceanic–atmospheric teleconnections in driving forage production in Europe. As such, it provides a useful springboard to implement a grassland seasonal forecasting system in this continent. |
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2020-06-08 |
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LiveM, ft_macsur |
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MA @ admin @ |
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5233 |
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Author |
Lardy, R.; Bellocchi, G.; Martin, R. |
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Title |
Vuln-Indices: Software to assess vulnerability to climate change |
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Journal Article |
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Year |
2015 |
Publication |
Computers and Electronics in Agriculture |
Abbreviated Journal |
Computers and Electronics in Agriculture |
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114 |
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53-57 |
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Keywords |
climate change; Java; vulnerability indices; pasture simulation-model; integrated assessment; environmental-change; change impacts; system |
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Vuln-Indices Java-based software was developed on concepts of vulnerability to climate change of agro-ecological systems. It implements the calculation of vulnerability indices on series of state variables for assessments at both site and region levels. The tool is useful because synthetic indices help capturing complex processes and prove effective to identify the factors responsible for vulnerability and their relative importance. It is suggested that the tool may be plausible for use with stakeholders to disseminate information of climate change impacts. (C) 2015 Elsevier B.V. All rights reserved. |
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English |
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0168-1699 |
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LiveM, ft_macsur |
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MA @ admin @ |
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4648 |
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Author |
Ma, S.; Lardy, R.; Graux, A.-I.; Ben Touhami, H.; Klumpp, K.; Martin, R.; Bellocchi, G. |
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Title |
Regional-scale analysis of carbon and water cycles on managed grassland systems |
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Journal Article |
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Year |
2015 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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72 |
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356-371 |
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Keywords |
carbon flux; eddy flux measurements; model evaluation; pasture simulation model (pasim); water balance; pasture simulation-model; nitrous-oxide emissions; primary productivity npp; comparing global-models; net ecosystem exchange; greenhouse-gas balance; climate-change; agricultural systems; co2 exchange; european grasslands |
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Predicting regional and global carbon (C) and water dynamics on grasslands has become of major interest, as grasslands are one of the most widespread vegetation types worldwide, providing a number of ecosystem services (such as forage production and C storage). The present study is a contribution to a regional-scale analysis of the C and water cycles on managed grasslands. The mechanistic biogeochemical model PaSim (Pasture Simulation model) was evaluated at 12 grassland sites in Europe. A new parameterization was obtained on a common set of eco-physiological parameters, which represented an improvement of previous parameterization schemes (essentially obtained via calibration at specific sites). We found that C and water fluxes estimated with the parameter set are in good agreement with observations. The model with the new parameters estimated that European grassland are a sink of C with 213 g C m(-2) yr(-1), which is close to the observed net ecosystem exchange (NEE) flux of the studied sites (185 g C m(-2) yr(-1) on average). The estimated yearly average gross primary productivity (GPP) and ecosystem respiration (RECO) for all of the study sites are 1220 and 1006 g C m(-2) yr(-1), respectively, in agreement with observed average GPP (1230 g C m(-2) yr(-1)) and RECO (1046 g C m(-2) yr(-1)). For both variables aggregated on a weekly basis, the root mean square error (RMSE) was similar to 5-16 g C week(-1) across the study sites, while the goodness of fit (R-2) was similar to 0.4-0.9. For evapotranspiration (ET), the average value of simulated ET (415 mmyr(-1)) for all sites and years is close to the average value of the observed ET (451 mm yr(-1)) by flux towers (on a weekly basis, RMSE similar to 2-8 mm week(-1); R-2 = 0.3-0.9). However, further model development is needed to better represent soil water dynamics under dry conditions and soil temperature in winter. A quantification of the uncertainties introduced by spatially generalized parameter values in C and water exchange estimates is also necessary. In addition, some uncertainties in the input management data call for the need to improve the quality of the observational system. |
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2015-10-09 |
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English |
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1364-8152 |
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CropM, LiveM, ft_macsur |
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MA @ admin @ |
Serial |
4695 |
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