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Author |
Mansouri, M.; Destain, M.-F. |
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Title |
Predicting biomass and grain protein content using Bayesian methods |
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Journal Article |
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Year |
2015 |
Publication |
Stochastic Environmental Research and Risk Assessment |
Abbreviated Journal |
Stoch. Environ. Res. Risk Assess. |
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29 |
Issue |
4 |
Pages |
1167-1177 |
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Keywords |
crop model; particle filter; prediction; ensemble kalman filter; parameter-estimation; particle filters; decision-support; state estimation; model; nitrogen; navigation; tracking; systems |
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Abstract |
This paper deals with the problem of predicting biomass and grain protein content using improved particle filtering (IPF) based on minimizing the Kullback-Leibler divergence. The performances of IPF are compared with those of the conventional particle filtering (PF) in two comparative studies. In the first one, we apply IPF and PF at a simple dynamic crop model with the aim to predict a single state variable, namely the winter wheat biomass, and to estimate several model parameters. In the second study, the proposed IPF and the PF are applied to a complex crop model (AZODYN) to predict a winter-wheat quality criterion, namely the grain protein content. The results of both comparative studies reveal that the IPF method provides a better estimation accuracy than the PF method. The benefit of the IPF method lies in its ability to provide accuracy related advantages over the PF method since, unlike the PF which depends on the choice of the sampling distribution used to estimate the posterior distribution, the IPF yields an optimum choice of this sampling distribution, which also utilizes the observed data. The performance of the proposed method is evaluated in terms of estimation accuracy, root mean square error, mean absolute error and execution times. |
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1436-3240 1436-3259 |
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CropM |
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MA @ admin @ |
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4664 |
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Author |
Mansouri, M.; Dumont, B.; Leemans, V.; Destain, M.-F. |
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Title |
Bayesian methods for predicting LAI and soil water content |
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Journal Article |
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Year |
2014 |
Publication |
Precision Agriculture |
Abbreviated Journal |
Precision Agric. |
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15 |
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2 |
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184-201 |
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Keywords |
crop model; bayes; data assimilation; extended kalman filtering; particle filtering; variational filtering; leaf-area index; parameter-estimation; crop models; moisture; instruments; management; sensors; state |
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Abstract |
LAI of winter wheat (Triticum aestivum L.) and soil water content of the topsoil (200 mm) and of the subsoil (500 mm) were considered as state variables of a dynamic soil-crop system. This system was assumed to progress according to a Bayesian probabilistic state space model, in which real values of LAI and soil water content were daily introduced in order to correct the model trajectory and reach better future evolution. The chosen crop model was mini STICS which can reduce the computing and execution times while ensuring the robustness of data processing and estimation. To predict simultaneously state variables and model parameters in this non-linear environment, three techniques were used: extended Kalman filtering (EKF), particle filtering (PF), and variational filtering (VF). The significantly improved performance of the VF method when compared to EKF and PF is demonstrated. The variational filter has a low computational complexity and the convergence speed of states and parameters estimation can be adjusted independently. Detailed case studies demonstrated that the root mean square error of the three estimated states (LAI and soil water content of two soil layers) was smaller and that the convergence of all considered parameters was ensured when using VF. Assimilating measurements in a crop model allows accurate prediction of LAI and soil water content at a local scale. As these biophysical properties are key parameters in the crop-plant system characterization, the system has the potential to be used in precision farming to aid farmers and decision makers in developing strategies for site-specific management of inputs, such as fertilizers and water irrigation. |
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1385-2256 |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4629 |
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Boeckx, T.; Winters, A.L.; Webb, K.J.; Kingston-Smith, A.H. |
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Title |
Polyphenol oxidase in leaves: is there any significance to the chloroplastic localization |
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Journal Article |
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Year |
2015 |
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Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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66 |
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12 |
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3571-3579 |
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Catechol Oxidase/*metabolism; Cell Compartmentation; Chloroplasts/*enzymology; Environment; Photosynthesis; Plant Leaves/*enzymology; Abiotic stress; polyphenol oxidase; secondary metabolism. |
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Polyphenol oxidase (PPO) catalyses the oxidation of monophenols and/or o-diphenols to o-quinones with the concomitant reduction of oxygen to water which results in protein complexing and the formation of brown melanin pigments. The most frequently suggested role for PPO in plants has been in defence against herbivores and pathogens, based on the physical separation of the chloroplast-localized enzyme from the vacuole-localized substrates. The o-quinone-protein complexes, formed as a consequence of cell damage, may reduce the nutritional value of the tissue and thereby reduce predation but can also participate in the formation of structural barriers against invading pathogens. However, since a sufficient level of compartmentation-based regulation could be accomplished if PPO was targeted to the cytosol, the benefit derived by some plant species in having PPO present in the chloroplast lumen remains an intriguing question. So is there more to the chloroplastic location of PPO? An interaction between PPO activity and photosynthesis has been proposed on more than one occasion but, to date, evidence either for or against direct involvement has been equivocal, and the lack of identified chloroplastic substrates remains an issue. Similarly, PPO has been suggested to have both pro- and anti-oxidant functions. Nevertheless, several independent lines of evidence suggest that PPO responds to environmental conditions and could be involved in the response of plants to abiotic stress. This review highlights our current understanding of the in vivo functions of PPO and considers the potential opportunities it presents for exploitation to increase stress tolerance in food crops. |
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0022-0957 1460-2431 |
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Review |
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CropM |
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MA @ admin @ |
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4552 |
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Lotze-Campen, H.; von Lampe, M.; Kyle, P.; Fujimori, S.; Havlik, P.; van Meijl, H.; Hasegawa, T.; Popp, A.; Schmitz, C.; Tabeau, A.; Valin, H.; Willenbockel, D.; Wise, M. |
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Title |
Impacts of increased bioenergy demand on global food markets: an AgMIP economic model intercomparison |
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Journal Article |
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Year |
2014 |
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Agricultural Economics |
Abbreviated Journal |
Agric. Econ. |
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45 |
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1 |
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103-116 |
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energy demand; agricultural markets; general equilibrium modeling; partial equilibrium modeling; model comparison; greenhouse-gas emissions; land-use; energy; productivity; scenarios; policies; capture; storage; system |
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Integrated Assessment studies have shown that meeting ambitious greenhouse gas mitigation targets will require substantial amounts of bioenergy as part of the future energy mix. In the course of the Agricultural Model Intercomparison and Improvement Project (AgMIP), five global agro-economic models were used to analyze a future scenario with global demand for ligno-cellulosic bioenergy rising to about 100 ExaJoule in 2050. From this exercise a tentative conclusion can be drawn that ambitious climate change mitigation need not drive up global food prices much, if the extra land required for bioenergy production is accessible or if the feedstock, for example, from forests, does not directly compete for agricultural land. Agricultural price effects across models by the year 2050 from high bioenergy demand in an ambitious mitigation scenario appear to be much smaller (+5% average across models) than from direct climate impacts on crop yields in a high-emission scenario (+25% average across models). However, potential future scarcities of water and nutrients, policy-induced restrictions on agricultural land expansion, as well as potential welfare losses have not been specifically looked at in this exercise. |
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0169-5150 |
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CropM, TradeM |
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MA @ admin @ |
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4532 |
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Waha, K.; Müller, C.; Rolinski, S. |
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Separate and combined effects of temperature and precipitation change on maize yields in sub-Saharan Africa for mid- to late-21st century |
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Journal Article |
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2013 |
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Global and Planetary Change |
Abbreviated Journal |
Global and Planetary Change |
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106 |
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1-12 |
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climate change; wet season; water stress; temperature stress; hierarchical cluster analysis; global vegetation model; climate-change; southern africa; east-africa; part i; food; heat; agriculture; variability; impacts |
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Maize (Zea mays L) is one of the most important food crops and very common in all parts of sub-Saharan Africa. In 2010 53 million tons of maize were produced in sub-Saharan Africa on about one third of the total harvested cropland area (similar to 33 million ha). Our aim is to identify the limiting agroclimatic variable for maize growth and development in sub-Saharan Africa by analyzing the separated and combined effects of temperature and precipitation. Under changing climate, both climate variables are projected to change severely, and their impacts on crop yields are frequently assessed using process-based crop models. However it is often unclear which agroclimatic variable will have the strongest influence on crop growth and development under climate change and previous studies disagree over this question. We create synthetic climate data in order to study the effect of large changes in the length of the wet season and the amount of precipitation during the wet season both separately and in combination with changes in temperature. The dynamic global vegetation model for managed land LPJmL is used to simulate maize yields under current and future climatic conditions for the two 10-year periods 2056-2065 and 2081-2090 for three climate scenarios for the A1b emission scenario but without considering the beneficial CO2 fertilization effect. The importance of temperature and precipitation effects on maize yields varies spatially and we identify four groups of crop yield changes: regions with strong negative effects resulting from climate change (<-33% yield change), regions with moderate (-33% to -10% yield change) or slight negative effects (-10% to +6% yield change), and regions with positive effects arising from climate change mainly in currently temperature-limited high altitudes (>+6% yield change). In the first three groups temperature increases lead to maize yield reductions of 3 to 20%, with the exception of mountainous and thus cooler regions in South and East Africa. A reduction of the wet season precipitation causes decreases in maize yield of at least 30% and prevails over the effect of increased temperatures in southern parts of Mozambique and Zambia, the Sahel and parts of eastern Africa in the two projection periods. This knowledge about the limiting abiotic stress factor in each region will help to prioritize future research needs in modeling of agricultural systems as well as in drought and heat stress breeding programs and to identify adaption options in agricultural development projects. On the other hand the study enhances the understanding of temperature and water stress effects on crop yields in a global vegetation model in order to identify future research and model development needs. (C) 2013 Elsevier B.V. All rights reserved. |
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0921-8181 |
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CropM, ft_macsur |
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MA @ admin @ |
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4508 |
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