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Boeckx, T.; Winters, A.L.; Webb, K.J.; Kingston-Smith, A.H. |
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Title |
Polyphenol oxidase in leaves: is there any significance to the chloroplastic localization |
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Journal Article |
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Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
66 |
Issue |
12 |
Pages |
3571-3579 |
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Keywords |
Catechol Oxidase/*metabolism; Cell Compartmentation; Chloroplasts/*enzymology; Environment; Photosynthesis; Plant Leaves/*enzymology; Abiotic stress; polyphenol oxidase; secondary metabolism. |
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Polyphenol oxidase (PPO) catalyses the oxidation of monophenols and/or o-diphenols to o-quinones with the concomitant reduction of oxygen to water which results in protein complexing and the formation of brown melanin pigments. The most frequently suggested role for PPO in plants has been in defence against herbivores and pathogens, based on the physical separation of the chloroplast-localized enzyme from the vacuole-localized substrates. The o-quinone-protein complexes, formed as a consequence of cell damage, may reduce the nutritional value of the tissue and thereby reduce predation but can also participate in the formation of structural barriers against invading pathogens. However, since a sufficient level of compartmentation-based regulation could be accomplished if PPO was targeted to the cytosol, the benefit derived by some plant species in having PPO present in the chloroplast lumen remains an intriguing question. So is there more to the chloroplastic location of PPO? An interaction between PPO activity and photosynthesis has been proposed on more than one occasion but, to date, evidence either for or against direct involvement has been equivocal, and the lack of identified chloroplastic substrates remains an issue. Similarly, PPO has been suggested to have both pro- and anti-oxidant functions. Nevertheless, several independent lines of evidence suggest that PPO responds to environmental conditions and could be involved in the response of plants to abiotic stress. This review highlights our current understanding of the in vivo functions of PPO and considers the potential opportunities it presents for exploitation to increase stress tolerance in food crops. |
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0022-0957 1460-2431 |
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Review |
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CropM |
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MA @ admin @ |
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4552 |
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Lotze-Campen, H.; von Lampe, M.; Kyle, P.; Fujimori, S.; Havlik, P.; van Meijl, H.; Hasegawa, T.; Popp, A.; Schmitz, C.; Tabeau, A.; Valin, H.; Willenbockel, D.; Wise, M. |
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Title |
Impacts of increased bioenergy demand on global food markets: an AgMIP economic model intercomparison |
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Journal Article |
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Year |
2014 |
Publication |
Agricultural Economics |
Abbreviated Journal |
Agric. Econ. |
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45 |
Issue |
1 |
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103-116 |
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Keywords |
energy demand; agricultural markets; general equilibrium modeling; partial equilibrium modeling; model comparison; greenhouse-gas emissions; land-use; energy; productivity; scenarios; policies; capture; storage; system |
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Integrated Assessment studies have shown that meeting ambitious greenhouse gas mitigation targets will require substantial amounts of bioenergy as part of the future energy mix. In the course of the Agricultural Model Intercomparison and Improvement Project (AgMIP), five global agro-economic models were used to analyze a future scenario with global demand for ligno-cellulosic bioenergy rising to about 100 ExaJoule in 2050. From this exercise a tentative conclusion can be drawn that ambitious climate change mitigation need not drive up global food prices much, if the extra land required for bioenergy production is accessible or if the feedstock, for example, from forests, does not directly compete for agricultural land. Agricultural price effects across models by the year 2050 from high bioenergy demand in an ambitious mitigation scenario appear to be much smaller (+5% average across models) than from direct climate impacts on crop yields in a high-emission scenario (+25% average across models). However, potential future scarcities of water and nutrients, policy-induced restrictions on agricultural land expansion, as well as potential welfare losses have not been specifically looked at in this exercise. |
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0169-5150 |
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CropM, TradeM |
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MA @ admin @ |
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4532 |
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Waha, K.; Müller, C.; Rolinski, S. |
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Separate and combined effects of temperature and precipitation change on maize yields in sub-Saharan Africa for mid- to late-21st century |
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2013 |
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Global and Planetary Change |
Abbreviated Journal |
Global and Planetary Change |
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106 |
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1-12 |
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climate change; wet season; water stress; temperature stress; hierarchical cluster analysis; global vegetation model; climate-change; southern africa; east-africa; part i; food; heat; agriculture; variability; impacts |
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Maize (Zea mays L) is one of the most important food crops and very common in all parts of sub-Saharan Africa. In 2010 53 million tons of maize were produced in sub-Saharan Africa on about one third of the total harvested cropland area (similar to 33 million ha). Our aim is to identify the limiting agroclimatic variable for maize growth and development in sub-Saharan Africa by analyzing the separated and combined effects of temperature and precipitation. Under changing climate, both climate variables are projected to change severely, and their impacts on crop yields are frequently assessed using process-based crop models. However it is often unclear which agroclimatic variable will have the strongest influence on crop growth and development under climate change and previous studies disagree over this question. We create synthetic climate data in order to study the effect of large changes in the length of the wet season and the amount of precipitation during the wet season both separately and in combination with changes in temperature. The dynamic global vegetation model for managed land LPJmL is used to simulate maize yields under current and future climatic conditions for the two 10-year periods 2056-2065 and 2081-2090 for three climate scenarios for the A1b emission scenario but without considering the beneficial CO2 fertilization effect. The importance of temperature and precipitation effects on maize yields varies spatially and we identify four groups of crop yield changes: regions with strong negative effects resulting from climate change (<-33% yield change), regions with moderate (-33% to -10% yield change) or slight negative effects (-10% to +6% yield change), and regions with positive effects arising from climate change mainly in currently temperature-limited high altitudes (>+6% yield change). In the first three groups temperature increases lead to maize yield reductions of 3 to 20%, with the exception of mountainous and thus cooler regions in South and East Africa. A reduction of the wet season precipitation causes decreases in maize yield of at least 30% and prevails over the effect of increased temperatures in southern parts of Mozambique and Zambia, the Sahel and parts of eastern Africa in the two projection periods. This knowledge about the limiting abiotic stress factor in each region will help to prioritize future research needs in modeling of agricultural systems as well as in drought and heat stress breeding programs and to identify adaption options in agricultural development projects. On the other hand the study enhances the understanding of temperature and water stress effects on crop yields in a global vegetation model in order to identify future research and model development needs. (C) 2013 Elsevier B.V. All rights reserved. |
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0921-8181 |
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CropM, ft_macsur |
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MA @ admin @ |
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4508 |
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Podhora, A.; Helming, K.; Adenäuer, L.; Heckelei, T.; Kautto, P.; Reidsma, P.; Rennings, K.; Turnpenny, J.; Jansen, J. |
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Title |
The policy-relevancy of impact assessment tools: Evaluating nine years of European research funding |
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Journal Article |
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2013 |
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Environmental Science & Policy |
Abbreviated Journal |
Environmental Science & Policy |
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31 |
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85-95 |
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Keywords |
impact assessment tools; policy appraisal; science policy interface; sustainable development; european commission; affecting land-use; of-the-art; integrated assessment; sustainable development; agricultural systems; analytical framework; union; part |
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Since 2002, the European Commission has employed the instrument of ex-ante impact assessments (IA) to help focus its policy-making process on implementing sustainable development. Scientific tools should play an essential role of providing the evidence base to assess the impacts of alternative policy options. To identify the contribution of research funding for IA tool development, this paper analysed the variety of IA tools designed in projects funded by European Framework Programmes (FPs) 6 and 7. The paper is based on project information available on the European Cordis website, individual project websites and a verification of the results by the project coordinators. We analysed the projects from the interests of IA practitioners as tool users (European policy and impact areas addressed by the tools, jurisdictional application levels and tool categories). Out of the 7.781 projects funded in FP6 and FP7, 203 could be identified that designed tools for the IA process. Nearly half of them applied to environmental, agricultural and transport policy areas. Within these areas, the tools primarily addressed environmental impact areas, less economic and least social impact areas. The IA tools focused on European policies. Models represented the largest tool category, whereas approximately half of the tools could not be clearly categorized. Concerning our analysis criteria, the tool descriptions available on the internet were often unclear and thus may limit the application potential of the tools because of a mismatch of technical terms and categorisation criteria between tool providers and tool users. Future IA tools require a joint political and scientific typology and a narrowing of the gaps, e.g., with view to multi-jurisdictional application and a clear reference to the steps of the IA process. (C) 2013 Elsevier Ltd. All rights reserved. |
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1462-9011 |
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TradeM |
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MA @ admin @ |
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4500 |
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Mansouri, M.; Dumont, B.; Destain, M.-F. |
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Modeling and prediction of nonlinear environmental system using Bayesian methods |
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Journal Article |
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2013 |
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Computers and Electronics in Agriculture |
Abbreviated Journal |
Computers and Electronics in Agriculture |
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92 |
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16-31 |
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state and parameter estimation; variational filter; particle filter; extended kalman filter; nonlinear environmental system; leaf area index and soil moisture model; extended kalman filter; state-space models; parameter-estimation; particle filters; navigation; tutorial; tracking |
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An environmental dynamic system is usually modeled as a nonlinear system described by a set of nonlinear ODEs. A central challenge in computational modeling of environmental systems is the determination of the model parameters. In these cases, estimating these variables or parameters from other easily obtained measurements can be extremely useful. This work addresses the problem of monitoring and modeling a leaf area index and soil moisture model (LSM) using state estimation. The performances of various conventional and state-of-the-art state estimation techniques are compared when they are utilized to achieve this objective. These techniques include the extended Kalman filter (EKF), particle filter (PF), and the more recently developed technique variational filter (VF). Specifically, two comparative studies are performed. In the first comparative study, the state variables (the leaf-area index LAI, the volumetric water content of the soil layer 1, HUR1 and the volumetric water content of the soil layer 2, HUR2) are estimated from noisy measurements of these variables, and the various estimation techniques are compared by computing the estimation root mean square error (RMSE) with respect to the noise-free data. In the second comparative study, the state variables as well as the model parameters are simultaneously estimated. In this case, in addition to comparing the performances of the various state estimation techniques, the effect of number of estimated model parameters on the accuracy and convergence of these techniques are also assessed. The results of both comparative studies show that the PF provides a higher accuracy than the EKF, which is due to the limited ability of the EKF to handle highly nonlinear processes. The results also show that the VF provides a significant improvement over the PF because, unlike the PF which depends on the choice of sampling distribution used to estimate the posterior distribution, the VF yields an optimum choice of the sampling distribution, which also accounts for the observed data. The results of the second comparative study show that, for all techniques, estimating more model parameters affects the estimation accuracy as well as the convergence of the estimated states and parameters. However, the VF can still provide both convergence as well as accuracy related advantages over other estimation methods. (C) 2013 Elsevier B.V. All rights reserved. |
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0168-1699 |
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MA @ admin @ |
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4495 |
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