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Author (up) Lai, R.; Arca, P.; Lagomarsino, A.; Cappai, C.; Seddaiu, G.; Demurtas, C.E.; Roggero, P.P. doi  openurl
  Title Manure fertilization increases soil respiration and creates a negative carbon budget in a Mediterranean maize (Zea mays L.)-based cropping system Type Journal Article
  Year 2017 Publication Catena Abbreviated Journal Catena  
  Volume 151 Issue Pages 202-212  
  Keywords Biomass; C turnover; GHG emission; Microbial activity; Soil moisture; Organic-Matter Dynamics; Co2 Efflux; N Fertilization; Forage Systems; Winter-Wheat; Nitrogen; Temperature; Forest; Water; Root  
  Abstract Agronomic research is important to identify suitable options for improving soil carbon (C) sequestration and reducing soil CO2 emissions. Therefore, the objectives of this study were i) to analyse the on-farm effects of different nitrogen fertilization sources on soil respiration, ii) to explore the effect of fertilization on soil respiration sensitivity to soil temperature (T) and iii) to assess the effect of the different fertilization regimes on the soil C balance. We hypothesized that i) the soil CO2 emission dynamics in Mediterranean irrigated cropping systems were mainly affected by fertilization management and T and ii) fertilization affected the soil C budget via different C inputs and CO2 efflux. Four fertilization systems (farmyard manure, cattle slurry, cattle slurry + mineral, and mineral) were compared in a double-crop rotation based on silage maize (Zea mays L) and a mixture of Italian ryegrass (Lolium multiflorum Lam.) and oats (Avena sativa L). The research was performed in the dairy district of Arborea, in the coastal zone of Sardinia (Italy), from May 2011 to May 2012. The soil was a Psammentic Palexeralfs with a sandy texture (940 g sand kg(-1)). The soil total respiration (SR), heterotrophic respiration (Rh), T and soil water content (SWC) were simultaneously measured in situ. The soil C balance was computed considering the Rh C losses and the soil C inputs from fertilizer and crop residues. The results showed that the maximum soil CO2 emission rates soon after the application of organic fertilizer reached values up to 121,1111 1 111(-2) s(-1). On average, the manure fertilizer showed significantly higher CO2 emissions, which resulted in a negative annual C balance (-2.9 t ha(-1)). T also affected the soil respiration temporal dynamics during the summer, consistently with results obtained in other temperate climatic regions that are characterized by wet summers and contrary to results from rainfed Mediterranean systems where the summer SR and Rh are constrained by the low SWC. The sensitivity of soil respiration to temperature significantly increased with C input from fertilizer. In conclusion, this research supported the hypotheses tested. Furthermore, the results indicated that i) soil CO2 efflux was significantly affected by fertilization management and T, and ii) fertilization with manure increased the soil respiration and resulted in a significantly negative soil C budget. This latter finding could be primarily explained by a reduction in productivity and, consequently, in crop residue with organic fertilization alone as compared to mineral, by the favourable SWC and T for mineralization, and by the sandy soil texture, which hindered the formation of macroaggregates and hence soil C stabilization, making fertilizer organic inputs highly susceptible to mineralization. (C) 2016 Elsevier B.V. All rights reserved.  
  Address 2017-03-16  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language English Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0341-8162 ISBN Medium Article  
  Area Expedition Conference  
  Notes CropM, ft_MACSUR Approved no  
  Call Number MA @ admin @ Serial 4939  
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Author (up) Mansouri, M.; Dumont, B.; Destain, M.-F. url  doi
openurl 
  Title Modeling and prediction of nonlinear environmental system using Bayesian methods Type Journal Article
  Year 2013 Publication Computers and Electronics in Agriculture Abbreviated Journal Computers and Electronics in Agriculture  
  Volume 92 Issue Pages 16-31  
  Keywords state and parameter estimation; variational filter; particle filter; extended kalman filter; nonlinear environmental system; leaf area index and soil moisture model; extended kalman filter; state-space models; parameter-estimation; particle filters; navigation; tutorial; tracking  
  Abstract An environmental dynamic system is usually modeled as a nonlinear system described by a set of nonlinear ODEs. A central challenge in computational modeling of environmental systems is the determination of the model parameters. In these cases, estimating these variables or parameters from other easily obtained measurements can be extremely useful. This work addresses the problem of monitoring and modeling a leaf area index and soil moisture model (LSM) using state estimation. The performances of various conventional and state-of-the-art state estimation techniques are compared when they are utilized to achieve this objective. These techniques include the extended Kalman filter (EKF), particle filter (PF), and the more recently developed technique variational filter (VF). Specifically, two comparative studies are performed. In the first comparative study, the state variables (the leaf-area index LAI, the volumetric water content of the soil layer 1, HUR1 and the volumetric water content of the soil layer 2, HUR2) are estimated from noisy measurements of these variables, and the various estimation techniques are compared by computing the estimation root mean square error (RMSE) with respect to the noise-free data. In the second comparative study, the state variables as well as the model parameters are simultaneously estimated. In this case, in addition to comparing the performances of the various state estimation techniques, the effect of number of estimated model parameters on the accuracy and convergence of these techniques are also assessed. The results of both comparative studies show that the PF provides a higher accuracy than the EKF, which is due to the limited ability of the EKF to handle highly nonlinear processes. The results also show that the VF provides a significant improvement over the PF because, unlike the PF which depends on the choice of sampling distribution used to estimate the posterior distribution, the VF yields an optimum choice of the sampling distribution, which also accounts for the observed data. The results of the second comparative study show that, for all techniques, estimating more model parameters affects the estimation accuracy as well as the convergence of the estimated states and parameters. However, the VF can still provide both convergence as well as accuracy related advantages over other estimation methods. (C) 2013 Elsevier B.V. All rights reserved.  
  Address  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language English Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0168-1699 ISBN Medium Article  
  Area Expedition Conference  
  Notes CropM Approved no  
  Call Number MA @ admin @ Serial 4495  
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Author (up) Mansouri, M.; Dumont, B.; Leemans, V.; Destain, M.-F. url  doi
openurl 
  Title Bayesian methods for predicting LAI and soil water content Type Journal Article
  Year 2014 Publication Precision Agriculture Abbreviated Journal Precision Agric.  
  Volume 15 Issue 2 Pages 184-201  
  Keywords crop model; bayes; data assimilation; extended kalman filtering; particle filtering; variational filtering; leaf-area index; parameter-estimation; crop models; moisture; instruments; management; sensors; state  
  Abstract LAI of winter wheat (Triticum aestivum L.) and soil water content of the topsoil (200 mm) and of the subsoil (500 mm) were considered as state variables of a dynamic soil-crop system. This system was assumed to progress according to a Bayesian probabilistic state space model, in which real values of LAI and soil water content were daily introduced in order to correct the model trajectory and reach better future evolution. The chosen crop model was mini STICS which can reduce the computing and execution times while ensuring the robustness of data processing and estimation. To predict simultaneously state variables and model parameters in this non-linear environment, three techniques were used: extended Kalman filtering (EKF), particle filtering (PF), and variational filtering (VF). The significantly improved performance of the VF method when compared to EKF and PF is demonstrated. The variational filter has a low computational complexity and the convergence speed of states and parameters estimation can be adjusted independently. Detailed case studies demonstrated that the root mean square error of the three estimated states (LAI and soil water content of two soil layers) was smaller and that the convergence of all considered parameters was ensured when using VF. Assimilating measurements in a crop model allows accurate prediction of LAI and soil water content at a local scale. As these biophysical properties are key parameters in the crop-plant system characterization, the system has the potential to be used in precision farming to aid farmers and decision makers in developing strategies for site-specific management of inputs, such as fertilizers and water irrigation.  
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  Language English Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1385-2256 ISBN Medium Article  
  Area Expedition Conference  
  Notes CropM, ftnotmacsur Approved no  
  Call Number MA @ admin @ Serial 4629  
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Author (up) Nendel, C.; Wieland, R.; Mirschel, W.; Specka, X.; Guddat, C.; Kersebaum, K.C. url  doi
openurl 
  Title Simulating regional winter wheat yields using input data of different spatial resolution Type Journal Article
  Year 2013 Publication Field Crops Research Abbreviated Journal Field Crops Research  
  Volume 145 Issue Pages 67-77  
  Keywords monica; agro-ecosystem model; dynamic modelling; scaling; input data; climate-change; crop yield; nitrogen dynamics; food security; mineral nitrogen; soil-moisture; scaling-up; model; maize; water  
  Abstract The success of using agro-ecosystem models for the high-resolution simulation of agricultural yields for larger areas is often hampered by a lack of input data. We investigated the effect of different spatially resolved soil and weather data used as input for the MONICA model on its ability to reproduce winter wheat yields in the Federal State of Thuringia, Germany (16,172 km(2)). The combination of one representative soil and one weather station was insufficient to reproduce the observed mean yield of 6.66 +/- 0.87 t ha(-1) for the federal state. Use of a 100 m x 100 m grid of soil and relief information combined with just one representative weather station yielded a good estimator (7.01 +/- 1.47 t ha(-1)). The soil and relief data grid used in combination with weather information from 14 weather stations in a nearest neighbour approach produced even better results (6.60 +/- 1.37 t ha(-1)); the same grid used with 39 additional rain gauges and an interpolation algorithm that included an altitude correction of temperature data slightly overpredicted the observed mean (7.36 +/- 1.17 t ha(-1)). It was concluded that the apparent success of the first two high-resolution approaches over the latter was based on two effects that cancelled each other out: the calibration of MONICA to match high-yield experimental data and the growth-defining and -limiting effect of weather data that is not representative for large parts of the region. At the county and farm level the MONICA model failed to reproduce the 1992-2010 time series of yields, which is partly explained by the fact that many growth-reducing factors were not considered in the model. (C) 2013 Elsevier B.V. All rights reserved.  
  Address  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language English Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0378-4290 ISBN Medium Article  
  Area Expedition Conference  
  Notes CropM, ftnotmacsur Approved no  
  Call Number MA @ admin @ Serial 4498  
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Author (up) Rötter, R.P.; Appiah, M.; Fichtler, E.; Kersebaum, K.C.; Trnka, M.; Hoffmann, M.P. doi  openurl
  Title Linking modelling and experimentation to better capture crop impacts of agroclimatic extremes-A review Type Journal Article
  Year 2018 Publication Field Crops Research Abbreviated Journal  
  Volume 221 Issue Pages 142-156  
  Keywords ft_macsur; Agroclimatic extremes; Crop model; Heat; Drought; Heavy rain; Anthropogenic Climate-Change; Head-Emergence Frost; Weather Extremes; Wheat Yields; Temperature Variability; Induced Sterility; Food Security; Soil-Moisture; Plant-Growth; Winter-Wheat  
  Abstract Climate change implies higher frequency and magnitude of agroclimatic extremes threatening plant production and the provision of other ecosystem services. This review is motivated by a mismatch between advances made regarding deeper understanding of abiotic stress physiology and its incorporation into ecophysiological models in order to more accurately quantifying the impacts of extreme events at crop system or higher aggregation levels. Adverse agroclimatic extremes considered most detrimental to crop production include drought, heat, heavy rains/hail and storm, flooding and frost, and, in particular, combinations of them. Our core question is: How have and could empirical data be exploited to improve the capability of widely used crop simulation models in assessing crop impacts of key agroclimatic extremes for the globally most important grain crops? To date there is no comprehensive review synthesizing available knowledge for a broad range of extremes, grain crops and crop models as a basis for identifying research gaps and prospects. To address these issues, we selected eight major grain crops and performed three systematic reviews using SCOPUS for period 1995-2016. Furthermore, we amended/complemented the reviews manually and performed an in-depth analysis using a sub-sample of papers. Results show that by far the majority of empirical studies (1631 out of 1772) concentrate on the three agroclimatic extremes drought, heat and heavy rain and on the three major staples wheat, maize and rice (1259 out of 1772); the concentration on just a few has increased over time. With respect to modelling studies two model families, i.e. CERES-DSSAT and APSIM, are dearly dominating for wheat and maize; for rice, ORYZA2000 and CERES-Rice predominate and are equally strong. For crops other than maize and wheat the number of studies is small. Empirical and modelling papers don’t differ much in the proportions the various extreme events are dealt with drought and heat stress together account for approx. 80% of the studies. There has been a dramatic increase in the number of papers, especially after 2010. As a way forward, we suggest to have very targeted and well-designed experiments on the specific crop impacts of a given extreme as well as of combinations of them. This in particular refers to extremes addressed with insufficient specificity (e.g. drought) or being under-researched in relation to their economic importance (heavy rains/storm and flooding). Furthermore, we strongly recommend extending research to crops other than wheat, maize and rice.  
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  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number MA @ admin @ Serial 5199  
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