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Author |
Van Oijen, M.; Höglind, M. |
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Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
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Journal Article |
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Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
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Volume |
207 |
Issue |
3 |
Pages |
627-643 |
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Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
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Abstract |
Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
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2016-10-31 |
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0014-2336 |
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CropM, ft_macsur |
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MA @ admin @ |
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4820 |
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Author |
Siebert, S.; Ewert, F. |
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Title |
Future crop production threatened by extreme heat |
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Journal Article |
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Year |
2014 |
Publication |
Environmental Research Letters |
Abbreviated Journal |
Environ. Res. Lett. |
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9 |
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4 |
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Keywords |
climate-change; simulation-models; wheat yields; day length; temperature; growth; impact; co2; phenology; patterns |
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Abstract |
Heat is considered to be a major stress limiting crop growth and yields. While important findings on the impact of heat on crop yield have been made based on experiments in controlled environments, little is known about the effects under field conditions at larger scales. The study of Deryng et al (2014 Global crop yield response to extreme heat stress under multiple climate change futures Environ. Res. Lett. 9 034011), analysing the impact of heat stress on maize, spring wheat and soya bean under climate change, represents an important contribution to this emerging research field. Uncertainties in the occurrence of heat stress under field conditions, plant responses to heat and appropriate adaptation measures still need further investigation. |
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2016-10-31 |
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1748-9326 |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4813 |
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Author |
Rötter, R.P.; Tao, F.; Höhn, J.G.; Palosuo, T. |
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Title |
Use of crop simulation modelling to aid ideotype design of future cereal cultivars |
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Journal Article |
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Year |
2015 |
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Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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66 |
Issue |
12 |
Pages |
3463-3476 |
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Keywords |
Breeding/*methods; Climate Change; *Computer Simulation; Ecotype; Edible Grain/*growth & development; *Models, Theoretical; cereals; climate extremes; crop growth simulation; ensemble modelling; future cultivars; genetic modelling; ideotype breeding; model improvement; model-aided design |
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Abstract |
A major challenge of the 21st century is to achieve food supply security under a changing climate and roughly a doubling in food demand by 2050 compared to present, the majority of which needs to be met by the cereals wheat, rice, maize, and barley. Future harvests are expected to be especially threatened through increased frequency and severity of extreme events, such as heat waves and drought, that pose particular challenges to plant breeders and crop scientists. Process-based crop models developed for simulating interactions between genotype, environment, and management are widely applied to assess impacts of environmental change on crop yield potentials, phenology, water use, etc. During the last decades, crop simulation has become important for supporting plant breeding, in particular in designing ideotypes, i.e. ‘model plants’, for different crops and cultivation environments. In this review we (i) examine the main limitations of crop simulation modelling for supporting ideotype breeding, (ii) describe developments in cultivar traits in response to climate variations, and (iii) present examples of how crop simulation has supported evaluation and design of cereal cultivars for future conditions. An early success story for rice demonstrates the potential of crop simulation modelling for ideotype breeding. Combining conventional crop simulation with new breeding methods and genetic modelling holds promise to accelerate delivery of future cereal cultivars for different environments. Robustness of model-aided ideotype design can further be enhanced through continued improvements of simulation models to better capture effects of extremes and the use of multi-model ensembles. |
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2016-10-31 |
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0022-0957 1460-2431 |
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Review |
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CropM, ft_macsur |
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MA @ admin @ |
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4804 |
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Author |
Nelson, G.C.; van der Mensbrugghe, D.; Ahammad, H.; Blanc, E.; Calvin, K.; Hasegawa, T.; Havlik, P.; Heyhoe, E.; Kyle, P.; Lotze-Campen, H.; von Lampe, M.; Mason, d’C., Daniel; van Meijl, H.; Müller, C.; Reilly, J.; Robertson, R.; Sands, R.D.; Schmitz, C.; Tabeau, A.; Takahashi, K.; Valin, H.; Willenbockel, D. |
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Title |
Agriculture and climate change in global scenarios: why don’t the models agree |
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Journal Article |
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Year |
2014 |
Publication |
Agricultural Economics |
Abbreviated Journal |
Agric. Econ. |
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45 |
Issue |
1 |
Pages |
85-85 |
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Keywords |
climate change impacts; economic models of agriculture; scenarios; system model; demand; cmip5 |
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Abstract |
Agriculture is unique among economic sectors in the nature of impacts from climate change. The production activity that transforms inputs into agricultural outputs involves direct use of weather inputs (temperature, solar radiation available to the plant, and precipitation). Previous studies of the impacts of climate change on agriculture have reported substantial differences in outcomes such as prices, production, and trade arising from differences in model inputs and model specification. This article presents climate change results and underlying determinants from a model comparison exercise with 10 of the leading global economic models that include significant representation of agriculture. By harmonizing key drivers that include climate change effects, differences in model outcomes were reduced. The particular choice of climate change drivers for this comparison activity results in large and negative productivity effects. All models respond with higher prices. Producer behavior differs by model with some emphasizing area response and others yield response. Demand response is least important. The differences reflect both differences in model specification and perspectives on the future. The results from this study highlight the need to more fully compare the deep model parameters, to generate a call for a combination of econometric and validation studies to narrow the degree of uncertainty and variability in these parameters and to move to Monte Carlo type simulations to better map the contours of economic uncertainty. |
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2016-10-31 |
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0169-5150 |
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CropM, TradeM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4796 |
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Author |
Rötter, R.P.; Höhn, J.G.; Fronzek, S. |
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Title |
Projections of climate change impacts on crop production: A global and a Nordic perspective |
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Journal Article |
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Year |
2012 |
Publication |
Acta Agriculturae Scandinavica, Section A – Animal Science |
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Acta Agriculturae Scandinavica, Section A – Animal Science |
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Volume |
62 |
Issue |
4 |
Pages |
166-180 |
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Keywords |
climate change; impact projection; food production; uncertainty; crop simulation model; food security; integrated assessment; winter-wheat; scenarios; agriculture; adaptation; temperature; models; yield; scale |
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Abstract |
Global climate is changing and food production is very sensitive to weather and climate variations. Global assessments of climate change impacts on food production have been made since the early 1990s, initially with little attention to the uncertainties involved. Although there has been abundant analysis of uncertainties in future greenhouse gas emissions and their impacts on the climate system, uncertainties related to the way climate change projections are scaled down as appropriate for different analyses and in modelling crop responses to climate change, have been neglected. This review paper mainly addresses uncertainties in crop impact modelling and possibilities to reduce them. We specifically aim to (i) show ranges of projected climate change-induced impacts on crop yields, (ii) give recommendations on use of emission scenarios, climate models, regionalization and ensemble crop model simulations for different purposes and (iii) discuss improvements and a few known unknowns’ affecting crop impact projections. |
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2016-10-31 |
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0906-4702 1651-1972 |
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CropM, ftnotmacsur |
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Call Number |
MA @ admin @ |
Serial |
4802 |
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