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Author |
De Swaef, T.; Bellocchi, G.; Aper, J.; Lootens, P.; Roldan-Ruiz, I. |
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Title |
Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality |
Type |
Journal Article |
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Year |
2019 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
70 |
Issue |
9 |
Pages  |
2587-2604 |
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Keywords |
Breeding; grassland modelling; identifiability analysis; perennial; ryegrass; phenotyping; sensitivity analysis; pasture simulation-model; practical identifiability; crop; water; parameters; systems; carbon; uncertainty; sensitivity; emissions |
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Abstract |
Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized. |
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2020-02-14 |
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0022-0957 |
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LiveM, ft_macsur |
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no |
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Call Number |
MA @ admin @ |
Serial |
5231 |
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Author |
Müller, C.; Waha, K.; Bondeau, A.; Heinke, J. |
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Title |
Hotspots of climate change impacts in sub-Saharan Africa and implications for adaptation and development |
Type |
Journal Article |
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Year |
2014 |
Publication |
Global Change Biology |
Abbreviated Journal |
Glob. Chang. Biol. |
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Volume |
20 |
Issue |
8 |
Pages |
2505-2517 |
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Keywords |
Africa South of the Sahara; *Climate Change; Crops, Agricultural; Environment; Hydrology; *Models, Theoretical; Uncertainty; adaptation; climate change; development; impacts; modeling; sub-Saharan Africa |
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Abstract |
Development efforts for poverty reduction and food security in sub-Saharan Africa will have to consider future climate change impacts. Large uncertainties in climate change impact assessments do not necessarily complicate, but can inform development strategies. The design of development strategies will need to consider the likelihood, strength, and interaction of climate change impacts across biosphere properties. We here explore the spread of climate change impact projections and develop a composite impact measure to identify hotspots of climate change impacts, addressing likelihood and strength of impacts. Overlapping impacts in different biosphere properties (e.g. flooding, yields) will not only claim additional capacity to respond, but will also narrow the options to respond and develop. Regions with severest projected climate change impacts often coincide with regions of high population density and poverty rates. Science and policy need to propose ways of preparing these areas for development under climate change impacts. |
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1354-1013 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4534 |
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Bassu, S.; Brisson, N.; Durand, J.-L.; Boote, K.; Lizaso, J.; Jones, J.W.; Rosenzweig, C.; Ruane, A.C.; Adam, M.; Baron, C.; Basso, B.; Biernath, C.; Boogaard, H.; Conijn, S.; Corbeels, M.; Deryng, D.; De Sanctis, G.; Gayler, S.; Grassini, P.; Hatfield, J.; Hoek, S.; Izaurralde, C.; Jongschaap, R.; Kemanian, A.R.; Kersebaum, K.C.; Kim, S.-H.; Kumar, N.S.; Makowski, D.; Müller, C.; Nendel, C.; Priesack, E.; Pravia, M.V.; Sau, F.; Shcherbak, I.; Tao, F.; Teixeira, E.; Timlin, D.; Waha, K. |
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Title |
How do various maize crop models vary in their responses to climate change factors |
Type |
Journal Article |
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Year |
2014 |
Publication |
Global Change Biology |
Abbreviated Journal |
Glob. Chang. Biol. |
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Volume |
20 |
Issue |
7 |
Pages |
2301-2320 |
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Keywords |
Carbon Dioxide/metabolism; *Climate Change; Crops, Agricultural/growth & development/metabolism; Geography; Models, Biological; Temperature; Water/*metabolism; Zea mays/*growth & development/*metabolism; AgMIP; [Co2]; climate; maize; model intercomparison; simulation; uncertainty |
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Potential consequences of climate change on crop production can be studied using mechanistic crop simulation models. While a broad variety of maize simulation models exist, it is not known whether different models diverge on grain yield responses to changes in climatic factors, or whether they agree in their general trends related to phenology, growth, and yield. With the goal of analyzing the sensitivity of simulated yields to changes in temperature and atmospheric carbon dioxide concentrations [CO2 ], we present the largest maize crop model intercomparison to date, including 23 different models. These models were evaluated for four locations representing a wide range of maize production conditions in the world: Lusignan (France), Ames (USA), Rio Verde (Brazil) and Morogoro (Tanzania). While individual models differed considerably in absolute yield simulation at the four sites, an ensemble of a minimum number of models was able to simulate absolute yields accurately at the four sites even with low data for calibration, thus suggesting that using an ensemble of models has merit. Temperature increase had strong negative influence on modeled yield response of roughly -0.5 Mg ha(-1) per °C. Doubling [CO2 ] from 360 to 720 μmol mol(-1) increased grain yield by 7.5% on average across models and the sites. That would therefore make temperature the main factor altering maize yields at the end of this century. Furthermore, there was a large uncertainty in the yield response to [CO2 ] among models. Model responses to temperature and [CO2 ] did not differ whether models were simulated with low calibration information or, simulated with high level of calibration information. |
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1354-1013 |
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CropM |
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no |
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Call Number |
MA @ admin @ |
Serial |
4510 |
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Author |
Hutchings, N.J.; Özkan Gülzari, Ş.; de Haan, M.; Sandars, D. |
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Title |
How do farm models compare when estimating greenhouse gas emissions from dairy cattle production |
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Journal Article |
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Year |
2018 |
Publication |
Animal |
Abbreviated Journal |
Animal |
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Volume |
12 |
Issue |
10 |
Pages |
2171-2180 |
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Keywords |
dairy cattle; farm-scale; model; greenhouse gas; Future Climate Scenarios; Systems-Analysis; Milk-Production; Crop; Production; Mitigation; Intensity; Impacts |
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Abstract |
The European Union Effort Sharing Regulation (ESR) will require a 30% reduction in greenhouse gas (GHG) emissions by 2030 compared with 2005 from the sectors not included in the European Emissions Trading Scheme, including agriculture. This will require the estimation of current and future emissions from agriculture, including dairy cattle production systems. Using a farm-scale model as part of a Tier 3 method for farm to national scales provides a more holistic and informative approach than IPCC (2006) Tier 2 but requires independent quality control. Comparing the results of using models to simulate a range of scenarios that explore an appropriate range of biophysical and management situations can support this process by providing a framework for placing model results in context. To assess the variation between models and the process of understanding differences, estimates of GHG emissions from four farm-scale models (DailyWise, FarmAC, HolosNor and SFARMMOD) were calculated for eight dairy farming scenarios within a factorial design consisting of two climates (cool/dry and warm/wet) x two soil types (sandy and clayey) x two feeding systems (grass only and grass/maize). The milk yield per cow, follower cow ratio, manure management system, nitrogen (N) fertilisation and land area were standardised for all scenarios in order to associate the differences in the results with the model structure and function. Potential yield and application of available N in fertiliser and manure were specified separately for grass and maize. Significant differences between models were found in GHG emissions at the farm-scale and for most contributory sources, although there was no difference in the ranking of source magnitudes. The farm-scale GHG emissions, averaged over the four models, was 10.6 t carbon dioxide equivalents (CO(2)e)/ha per year, with a range of 1.9 t CO(2)e/ha per year. Even though key production characteristics were specified in the scenarios, there were still significant differences between models in the annual milk production per ha and the amounts of N fertiliser and concentrate feed imported. This was because the models differed in their description of biophysical responses and feedback mechanisms, and in the extent to which management functions were internalised. We conclude that comparing the results of different farm-scale models when applied to a range of scenarios would build confidence in their use in achieving ESR targets, justifying further investment in the development of a wider range of scenarios and software tools. |
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2019-01-07 |
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1751-7311 |
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TradeM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
5212 |
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Author |
Porter, J.R.; Christensen, S. |
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Title |
Deconstructing crop processes and models via identities |
Type |
Journal Article |
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Year |
2013 |
Publication |
Plant Cell and Environment |
Abbreviated Journal |
Plant Cell and Environment |
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Volume |
36 |
Issue |
11 |
Pages |
1919-1925 |
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Keywords |
Biomass; Carbon Dioxide/pharmacology; Climate Change; Crops, Agricultural/drug effects/*physiology; *Models, Biological; Kaya-Porter identity; crop models; deconstruction; resource use efficiency |
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Abstract |
This paper is part review and part opinion piece; it has three parts of increasing novelty and speculation in approach. The first presents an overview of how some of the major crop simulation models approach the issue of simulating the responses of crops to changing climatic and weather variables, mainly atmospheric CO2 concentration and increased and/or varying temperatures. It illustrates an important principle in models of a single cause having alternative effects and vice versa. The second part suggests some features, mostly missing in current crop models, that need to be included in the future, focussing on extreme events such as high temperature or extreme drought. The final opinion part is speculative but novel. It describes an approach to deconstruct resource use efficiencies into their constituent identities or elements based on the Kaya-Porter identity, each of which can be examined for responses to climate and climatic change. We give no promise that the final part is correct’, but we hope it can be a stimulation to thought, hypothesis and experiment, and perhaps a new modelling approach. |
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2016-10-31 |
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0140-7791 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4799 |
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