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Dumont, B.; Leemans, V.; Mansouri, M.; Bodson, B.; Destain, J.-P.; Destain, M.-F. |
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Title |
Parameter identification of the STICS crop model, using an accelerated formal MCMC approach |
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Journal Article |
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Year |
2014 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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Volume |
52 |
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121-135 |
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Keywords |
crop model; parameter estimation; bayes; stics; dream; global sensitivity-analysis; simulation-model; nitrogen balances; bayesian-approach; generic model; wheat; prediction; water; optimization; algorithm |
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Abstract  |
This study presents a Bayesian approach for the parameters’ identification of the STICS crop model based on the recently developed Differential Evolution Adaptive Metropolis (DREAM) algorithm. The posterior distributions of nine specific crop parameters of the STICS model were sampled with the aim to improve the growth simulations of a winter wheat (Triticum aestivum L) culture. The results obtained with the DREAM algorithm were initially compared to those obtained with a Nelder-Mead Simplex algorithm embedded within the OptimiSTICS package. Then, three types of likelihood functions implemented within the DREAM algorithm were compared, namely the standard least square, the weighted least square, and a transformed likelihood function that makes explicit use of the coefficient of variation (CV). The results showed that the proposed CV likelihood function allowed taking into account both noise on measurements and heteroscedasticity which are regularly encountered in crop modelling. (C) 2013 Elsevier Ltd. All rights reserved. |
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1364-8152 |
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CropM |
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MA @ admin @ |
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4520 |
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Vitali, A.; Felici, A.; Esposito, S.; Bernabucci, U.; Bertocchi, L.; Maresca, C.; Nardone, A.; Lacetera, N. |
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Title |
The effect of heat waves on dairy cow mortality |
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Journal Article |
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Year |
2015 |
Publication |
Journal of Dairy Science |
Abbreviated Journal |
J. Dairy Sci. |
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Volume |
98 |
Issue |
7 |
Pages |
4572-4579 |
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Keywords |
Animal Welfare; Animals; Cattle; Cross-Over Studies; Female; Heat Stress Disorders/*mortality; *Hot Temperature; Italy/epidemiology; Logistic Models; *Movement; Retrospective Studies; Seasons; dairy cow; global warming; heat wave; mortality; welfare |
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This study investigated the mortality of dairy cows during heat waves. Mortality data (46,610 cases) referred to dairy cows older than 24 mo that died on a farm from all causes from May 1 to September 30 during a 6-yr period (2002-2007). Weather data were obtained from 12 weather stations located in different areas of Italy. Heat waves were defined for each weather station as a period of at least 3 consecutive days, from May 1 to September 30 (2002-2007), when the daily maximum temperature exceeded the 90th percentile of the reference distribution (1971-2000). Summer days were classified as days in heat wave (HW) or not in heat wave (nHW). Days in HW were numbered to evaluate the relationship between mortality and length of the wave. Finally, the first 3 nHW days after the end of a heat wave were also considered to account for potential prolonged effects. The mortality risk was evaluated using a case-crossover design. A conditional logistic regression model was used to calculate odds ratio and 95% confidence interval for mortality recorded in HW compared with that recorded in nHW days pooled and stratified by duration of exposure, age of cows, and month of occurrence. Dairy cows mortality was greater during HW compared with nHW days. Furthermore, compared with nHW days, the risk of mortality continued to be higher during the 3 d after the end of HW. Mortality increased with the length of the HW. Considering deaths stratified by age, cows up to 28 mo were not affected by HW, whereas all the other age categories of older cows (29-60, 61-96, and >96 mo) showed a greater mortality when exposed to HW. The risk of death during HW was higher in early summer months. In particular, the highest risk of mortality was observed during June HW. Present results strongly support the implementation of adaptation strategies which may limit heat stress-related impairment of animal welfare and economic losses in dairy cow farm during HW. |
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2016-06-01 |
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0022-0302 |
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LiveM, ft_macsur |
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MA @ admin @ |
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4744 |
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Pirttioja, N.; Carter, T.R.; Fronzek, S.; Bindi, M.; Hoffmann, H.; Palosuo, T.; Ruiz-Ramos, M.; Tao, F.; Trnka, M.; Acutis, M.; Asseng, S.; Baranowski, P.; Basso, B.; Bodin, P.; Buis, S.; Cammarano, D.; Deligios, P.; Destain, M.F.; Dumont, B.; Ewert, F.; Ferrise, R.; François, L.; Gaiser, T.; Hlavinka, P.; Jacquemin, I.; Kersebaum, K.C.; Kollas, C.; Krzyszczak, J.; Lorite, I.J.; Minet, J.; Minguez, M.I.; Montesino-San Martin, M.; Moriondo, M.; Müller, C.; Nendel, C.; Öztürk, I.; Perego, A.; Rodríguez, A.; Ruane, A.C.; Ruget, F.; Sanna, M.; Semenov, M.A.; Slawinski, C.; Stratonovitch, P.; Supit, I.; Waha, K.; Wang, E.; Wu, L.; Zhao, Z.; Rötter, R.P. |
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Title |
Temperature and precipitation effects on wheat yield across a European transect: a crop model ensemble analysis using impact response surfaces |
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Journal Article |
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Year |
2015 |
Publication |
Climate Research |
Abbreviated Journal |
Clim. Res. |
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Volume |
65 |
Issue |
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Pages |
87-105 |
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Keywords |
climate; crop model; impact response surface; IRS; sensitivity analysis; wheat; yield; climate-change impacts; uncertainty; 21st-century; projections; simulation; growth; region |
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This study explored the utility of the impact response surface (IRS) approach for investigating model ensemble crop yield responses under a large range of changes in climate. IRSs of spring and winter wheat Triticum aestivum yields were constructed from a 26-member ensemble of process-based crop simulation models for sites in Finland, Germany and Spain across a latitudinal transect. The sensitivity of modelled yield to systematic increments of changes in temperature (-2 to +9°C) and precipitation (-50 to +50%) was tested by modifying values of baseline (1981 to 2010) daily weather, with CO2 concentration fixed at 360 ppm. The IRS approach offers an effective method of portraying model behaviour under changing climate as well as advantages for analysing, comparing and presenting results from multi-model ensemble simulations. Though individual model behaviour occasionally departed markedly from the average, ensemble median responses across sites and crop varieties indicated that yields decline with higher temperatures and decreased precipitation and increase with higher precipitation. Across the uncertainty ranges defined for the IRSs, yields were more sensitive to temperature than precipitation changes at the Finnish site while sensitivities were mixed at the German and Spanish sites. Precipitation effects diminished under higher temperature changes. While the bivariate and multi-model characteristics of the analysis impose some limits to interpretation, the IRS approach nonetheless provides additional insights into sensitivities to inter-model and inter-annual variability. Taken together, these sensitivities may help to pinpoint processes such as heat stress, vernalisation or drought effects requiring refinement in future model development. |
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0936-577x 1616-1572 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
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4662 |
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Zhao, G.; Webber, H.; Hoffmann, H.; Wolf, J.; Siebert, S.; Ewert, F. |
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Title |
The implication of irrigation in climate change impact assessment: a European-wide study |
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Journal Article |
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Year |
2015 |
Publication |
Global Change Biology |
Abbreviated Journal |
Glob. Chang. Biol. |
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Volume |
21 |
Issue |
11 |
Pages |
4031-4048 |
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Keywords |
CO2 effects; Lintul; Simplace; climate change; crop model; irrigation; water availability; yield change |
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This study evaluates the impacts of projected climate change on irrigation requirements and yields of six crops (winter wheat, winter barley, rapeseed, grain maize, potato, and sugar beet) in Europe. Furthermore, the uncertainty deriving from consideration of irrigation, CO2 effects on crop growth and transpiration, and different climate change scenarios in climate change impact assessments is quantified. Net irrigation requirement (NIR) and yields of the six crops were simulated for a baseline (1982-2006) and three SRES scenarios (B1, B2 and A1B, 2040-2064) under rainfed and irrigated conditions, using a process-based crop model, SIMPLACE <LINTUL5, DRUNIR, HEAT>. We found that projected climate change decreased NIR of the three winter crops in northern Europe (up to 81 mm), but increased NIR of all the six crops in the Mediterranean regions (up to 182 mm yr(-1)). Climate change increased yields of the three winter crops and sugar beet in middle and northern regions (up to 36%), but decreased their yields in Mediterranean countries (up to 81%). Consideration of CO2 effects can alter the direction of change in NIR for irrigated crops in the south and of yields for C3 crops in central and northern Europe. Constraining the model to rainfed conditions for spring crops led to a negative bias in simulating climate change impacts on yields (up to 44%), which was proportional to the irrigation ratio of the simulation unit. Impacts on NIR and yields were generally consistent across the three SRES scenarios for the majority of regions in Europe. We conclude that due to the magnitude of irrigation and CO2 effects, they should both be considered in the simulation of climate change impacts on crop production and water availability, particularly for crops and regions with a high proportion of irrigated crop area. |
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1354-1013 |
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CropM, ft_macsur |
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MA @ admin @ |
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4716 |
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Author |
Semenov, M.A.; Stratonovitch, P. |
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Title |
Adapting wheat ideotypes for climate change: accounting for uncertainties in CMIP5 climate projections |
Type |
Journal Article |
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Year |
2015 |
Publication |
Climate Research |
Abbreviated Journal |
Clim. Res. |
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Volume |
65 |
Issue |
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123-139 |
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Keywords |
sirius wheat model; lars-wg weather generator; downscaling; cmip5 ensemble; impact assessment; stochastic weather generators; earth system model; diverse canadian climates; high-temperature stress; change scenarios; lars-wg; decadal prediction; yield progress; heat-stress; aafc-wg |
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This study describes integration of climate change projections from the Coupled Model Intercomparison Project Phase 5 (CMIP5) multi-model ensemble with the LARS-WG weather generator, which delivers an attractive option for the downscaling of large-scale climate projections from global climate models (GCMs) to local-scale climate scenarios for impact assessments. A subset of 18 GCMs from the CMIP5 ensemble and 2 Representative Concentration Pathways (RCPs), RCP4.5 and RCP8.5, were integrated with LARS-WG. For computationally demanding impact assessments, where it is not practical to explore all possible combinations of GCM x RCP, a climate sensitivity index could be used to select a subset of GCMs which preserves the range of uncertainty found in CMIP5. This would allow us to quantify uncertainty in predictions of impacts resulting fromthe CMIP5 ensemble by conducting fewer simulation experiments. In a case study, we describe the use of the Sirius wheat simulation model to design in silico wheat ideotypes that are optimised for future climates in Europe, sampling uncertainty in GCMs, emission scenarios, time periods and European locations with contrasting climates. Two contrasting GCMs were selected for the analysis, ‘hot’ HadGEM2-ES and ‘cool’ GISS-E2-R-CC. Despite large uncertainty in future climate projections, we were able to identify target traits for wheat improvement which may assist breeding for high-yielding wheat cultivars with increased yield stability. |
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2015-10-12 |
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0936-577x 1616-1572 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
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4701 |
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