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Author |
Klosterhalfen, A.; Herbst, M.; Weihermueller, L.; Graf, A.; Schmidt, M.; Stadler, A.; Schneider, K.; Subke, J.-A.; Huisman, J.A.; Vereecken, H. |
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Title |
Multi-site calibration and validation of a net ecosystem carbon exchange model for croplands |
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Journal Article |
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Year |
2017 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
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Volume |
363 |
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Pages |
137-156 |
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Keywords  |
AgroC; Soil respiration; Carbon balance; Winter wheat; Grassland; NEE; LOLIUM-PERENNE L; SOIL HETEROTROPHIC RESPIRATION; LAND-SURFACE MODELS; EDDY-COVARIANCE; WINTER-WHEAT; CARBOHYDRATE CONTENT; TURNOVER MODEL; ROTHC MODEL; ROOT RATIOS; CO2 EFFLUX |
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Croplands play an important role in the carbon budget of many regions. However, the estimation of their carbon balance remains difficult due to diversity and complexity of the processes involved. We report the coupling of a one-dimensional soil water, heat, and CO2 flux model (SOILCO2), a pool concept of soil carbon turnover (RothC), and a crop growth module (SUCROS) to predict the net ecosystem exchange (NEE) of carbon. The coupled model, further referred to as AgroC, was extended with routines for managed grassland as well as for root exudation and root decay. In a first step, the coupled model was applied to two winter wheat sites and one upland grassland site in Germany. The model was calibrated based on soil water content, soil temperature, biometric, and soil respiration measurements for each site, and validated in terms of hourly NEE measured with the eddy covariance technique. The overall model performance of AgroC was sufficient with a model efficiency above 0.78 and a correlation coefficient above 0.91 for NEE. In a second step, AgroC was optimized with eddy covariance NEE measurements to examine the effect of different objective functions, constraints, and data-transformations on estimated NEE. It was found that NEE showed a distinct sensitivity to the choice of objective function and the inclusion of soil respiration data in the optimization process. In particular, both positive and negative day- and nighttime fluxes were found to be sensitive to the selected optimization strategy. Additional consideration of soil respiration measurements improved the simulation of small positive fluxes remarkably. Even though the model performance of the selected optimization strategies did not diverge substantially, the resulting cumulative NEE over simulation time period differed substantially. Therefore, it is concluded that data transformations, definitions of objective functions, and data sources have to be considered cautiously when a terrestrial ecosystem model is used to determine NEE by means of eddy covariance measurements. (C) 2017 Elsevier B.V. All rights reserved. |
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2017-11-09 |
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0304-3800 |
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CropM, ft_MACSUR |
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MA @ admin @ |
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5216 |
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Author |
Sanz-Cobena, A.; Misselbrook, T.H.; Hernaiz, P.; Vallejo, A. |
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Title |
Impact of rainfall to the effectiveness of pig slurry shallow injection method for NH3 mitigation in a Mediterranean soil |
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Journal Article |
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Year |
2019 |
Publication |
Atmospheric Environment |
Abbreviated Journal |
Atm. Environ. |
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216 |
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Pages |
116913 |
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Keywords |
ammonia; micrometeorological method; slurry incorporation; trade-offs; nitrous oxide; mediterranean agroecosystems; nitrous-oxide emissions; field-applied manure; organic fertilizers; ammonia emissions; methane emissions; N2O emissions; animal manures; management; losses; grassland |
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Ammonia emission from fertilized cropping systems is an important concern for stakeholders, particularly in regions with high livestock densities producing large amounts of manure. Application of pig slurries can result in very large losses of N through NH3 volatilization, thus decreasing the N use efficiency (NUE) of the applied manure. Shallow incorporation has been shown to significantly abate these losses. In this field study, we assessed the impact of contrasting weather conditions on the effectiveness of shallow injection to abate NH3 emissions from pig slurry application to a Mediterranean soil. As potential trade-offs of NH3 abatement, greenhouse gas emissions were also measured under conditions of high soil moisture. Compared with surface application of slurry, shallow injection effectively and significantly decreased NH3 losses independently of weather conditions, but reductions of NH3 emission were greater after heavy rainfall. In contrast, under these conditions, shallow injection triggered higher emissions of N2O and CH4. Our findings reinforce the idea that any single-pollutant abatement strategy needs to be designed and assessed in a regional context and considering potential trade-offs in the form of other pollutants. |
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2020-06-08 |
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LiveM, ft_macsur |
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MA @ admin @ |
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5234 |
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Van Oijen, M.; Höglind, M. |
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Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
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Journal Article |
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Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
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207 |
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3 |
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627-643 |
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BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
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Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
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2016-10-31 |
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0014-2336 |
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CropM, ft_macsur |
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MA @ admin @ |
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4820 |
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Ben Touhami, H.; Bellocchi, G. |
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Bayesian calibration of the Pasture Simulation model (PaSim) to simulate European grasslands under water stress |
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Journal Article |
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Year |
2015 |
Publication |
Ecological Informatics |
Abbreviated Journal |
Ecological Informatics |
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30 |
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356-364 |
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Bayesian calibration framework; Grasslands; Pasture Simulation model; (PaSim); integrated assessment models; chain monte-carlo; climate-change; computation; impacts; vulnerability; likelihoods; france |
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As modeling becomes a more widespread practice in the agro-environmental sciences, scientists need reliable tools to calibrate models against ever more complex and detailed data. We present a generic Bayesian computation framework for grassland simulation, which enables parameter estimation in the Bayesian formalism by using Monte Carlo approaches. We outline the underlying rationale, discuss the computational issues, and provide results from an application of the Pasture Simulation model (PaSim) to three European grasslands. The framework was suited to investigate the challenging problem of calibrating complex biophysical models to data from altered scenarios generated by precipitation reduction (water stress conditions). It was used to infer the parameters of manipulated grassland systems and to assess the gain in uncertainty reduction by updating parameter distributions using measurements of the output variables. |
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1574-9541 |
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CropM, LiveM, ft_macsur |
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MA @ admin @ |
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4697 |
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Author |
Hidy, D.; Barcza, Z.; Haszpra, L.; Churkina, G.; Pintér, K.; Nagy, Z. |
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Title |
Development of the Biome-BGC model for simulation of managed herbaceous ecosystems |
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Journal Article |
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Year |
2012 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
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226 |
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99-119 |
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biogeochemical model; biome-bgc; grassland; management; soil moisture; bayesian calibration; carbon flux model; regional applications; bayesian calibration; use efficiency; general-model; exchange; balance; climate; grassland; variability |
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Apart from measurements, numerical models are the most convenient instruments to analyze the carbon and water balance of terrestrial ecosystems and their interactions with changing environmental conditions. The process-based Biome-BGC model is widely used to simulate the storage and flux of water, carbon, and nitrogen within the vegetation, litter, and soil of unmanaged terrestrial ecosystems. Considering herbaceous vegetation related simulations with Biome-BGC, soil moisture and growing season control on ecosystem functioning is inaccurate due to the simple soil hydrology and plant phenology representation within the model. Consequently, Biome-BGC has limited applicability in herbaceous ecosystems because (1) they are usually managed; (2) they are sensitive to soil processes, most of all hydrology; and (3) their carbon balance is closely connected with the growing season length. Our aim was to improve the applicability of Biome-BGC for managed herbaceous ecosystems by implementing several new modules, including management. A new index (heatsum growing season index) was defined to accurately estimate the first and the final days of the growing season. Instead of a simple bucket soil sub-model, a multilayer soil sub-model was implemented, which can handle the processes of runoff, diffusion and percolation. A new module was implemented to simulate the ecophysiological effect of drought stress on plant mortality. Mowing and grazing modules were integrated in order to quantify the functioning of managed ecosystems. After modifications, the Biome-BGC model was calibrated and validated using eddy covariance-based measurement data collected in Hungarian managed grassland ecosystems. Model calibration was performed based on the Bayes theorem. As a result of these developments and calibration, the performance of the model was substantially improved. Comparison with measurement-based estimate showed that the start and the end of the growing season are now predicted with an average accuracy of 5 and 4 days instead of 46 and 85 days as in the original model. Regarding the different sites and modeled fluxes (gross primary production, total ecosystem respiration, evapotranspiration), relative errors were between 18-60% using the original model and 10-18% using the developed model; squares of the correlation coefficients were between 0.02-0.49 using the original model and 0.50-0.81 using the developed model. (c) 2011 Elsevier B.V. All rights reserved. |
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0304-3800 |
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LiveM |
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MA @ admin @ |
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4472 |
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