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Persson, T.; Höglind, M.; Gustavsson, A.-M.; Halling, M.; Jauhiainen, L.; Niemeläinen, O.; Thorvaldsson, G.; Virkajärvi, P. |
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Title |
Evaluation of the LINGRA timothy model under Nordic conditions |
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Journal Article |
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Year |
2014 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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Volume |
161 |
Issue |
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Pages |
87-97 |
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Keywords |
crop model; forage grass; perennial ley; simulation model; nutritive-value; climate-change; systems simulation; growth; dynamics; crop; performance; regrowth; calibration; pastures |
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Simulation models are frequently applied to determine the production potential of forage grasses under various scenarios, including climate change. Thorough calibrations and evaluations of forage grass models can help improve their applicability. This study evaluated the ability of the Light Interception and Utilization Simulator-GRAss (LINGRA) model to predict biomass yield of timothy (Phleum pratense L. cv. Grindstad) in the Nordic countries. Variety trial data for the first and second year after establishment were obtained for seven locations: Jokioinen, Finland (60 degrees 48 ‘ N; 23 degrees 29 ‘ E), Maaninka, Finland (63 degrees 09 ‘ N; 27 degrees 18 ‘ E), Korpa, Iceland (64 degrees 09 ‘ N; 21 degrees 45 ‘ W), Srheim, Norway (58 degrees 41 ‘ N; 5 degrees 39 ‘ E), Lillerud, Sweden (59 degrees 24’ N; 13 degrees 16 ‘ E), Ostersund, Sweden (63 degrees 15 ‘ N; 14 degrees 34 ‘ E) and Ulna Sweden (63 degrees 49 ‘ N; 20 degrees 13 ‘ E) from 1992 to 2012. Two calibrations of the LINGRA model were carried out using Bayesian techniques. In the first of these (SRrheim calibration), data on biomass yield and underlying variables obtained from independent field trials at Srheim were used. In the second (Nordic calibration), biomass data from the other locations were used as well. The model was validated against the remaining set of biomass yields from all locations not included in the Nordic calibration. The observed total seasonal yield the first and second year after establishment was 913 and 991 g DM m(-2) respectively on average across the locations. The corresponding average simulated yield after the Srheim calibration was 1044 (root mean square error (RMSE) 258) and 1112 g DM m(-2) (RMSE 312), respectively. After the Nordic calibration, the simulated average total seasonal yield was 863 (RMSE 242) the first year and 927 g DM m(-2) (RMSE 271) the second year after establishment. The differences between the observed and simulated first cut yield followed the same patterns, whereas the prediction accuracy for second cut yield did not differ substantially between the calibration approaches.Using the parameter set from the Nordic region decreased the model predictability at Srheim compared with only using model parameters derived from this location. These results show that using biomass data from several locations, instead of only one specific location, in the calibration of the LINGRA model improved the overall prediction accuracy of first cut dry matter yield and total seasonal dry matter yield across an environmentally heterogeneous region. To further analyse the usefulness of including multi-site data in forage grass model calibrations, other forage grass models could be evaluated against the same dataset. |
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0378-4290 |
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CropM, ft_macsur |
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MA @ admin @ |
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4634 |
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Author |
Ghaley, B.B.; Porter, J.R. |
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Title |
Ecosystem function and service quantification and valuation in a conventional winter wheat production system with the DAISY model in Denmark |
Type |
Journal Article |
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Year |
2014 |
Publication |
Ecosystem Services |
Abbreviated Journal |
Ecosystem Services |
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10 |
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Pages |
79-83 |
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Keywords |
soil organic matter; winter wheat production; informed decision-making; ecosystem function; ecosystem service; soil carbon sequestration; organic-matter dynamics; mitigate climate-change; calibration; validation; land |
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With inevitable link between ecosystem function (EF), ecosystem services (ES) and agricultural productivity, there is a need for quantification and valuation of EF and ES in agro-ecosystems. Management practices have significant effects on soil organic matter (SOM), affecting productivity, EF and ES provision. The objective was to quantify two EF: soil water storage and nitrogen mineralization and three ES: food and fodder production and carbon sequestration, in a conventional winter wheat production system at 2.6% SOM compared to 50% lower (1.3%) and 50% higher (3.9%) SOM in Denmark by DAISY model. At 2.6% SOM, the food and fodder production was 649 and 6.86 t ha(-1) year(-1) respectively whereas carbon sequestration and soil water storage was 9.73 t ha(-1) year and 684 mm ha(-1) year(-1) respectively and nitrogen mineralisation was 83.58 kg ha(-1) year(-1), AL 2.6% SOM, the two EF and three ES values were US$ 177 and US$ 2542 ha(-1) year respectively equivalent to US$ 96 and US$1370 million year(-1) respectively in Denmark. The EF and ES quantities and values were positively correlated with SOM content. Hence, the quantification and valuation of EF and ES provides an empirical tool for optimising the Er. and ES provision for agricultural productivity. (C) 2014 Elsevier B.V. All rights reserved |
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2212-0416 |
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CropM |
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MA @ admin @ |
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4625 |
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Author |
Höglind, M.; Van Oijen, M.; Cameron, D.; Persson, T. |
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Title |
Process-based simulation of growth and overwintering of grassland using the BASGRA model |
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Journal Article |
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Year |
2016 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
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335 |
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1-15 |
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Keywords |
Cold hardening; Frost injury; Phleum pratense L.; Process-based; modelling; Winter survival; Yield; low-temperature tolerance; perennial forage crops; dry-matter; production; climate-change; nutritive-value; snow-cover; bayesian; calibration; timothy regrowth; phleum-pratense; lolium-perenne |
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Process-based models (PBM) for simulation of weather dependent grass growth can assist farmers and plant breeders in addressing the challenges of climate change by simulating alternative roads of adaptation. They can also provide management decision support under current conditions. A drawback of existing grass models is that they do not take into account the effect of winter stresses, limiting their use for full-year simulations in areas where winter survival is a key factor for yield security. Here, we present a novel full-year PBM for grassland named BASGRA. It was developed by combining the LINGRA grassland model (Van Oijen et al., 2005a) with models for cold hardening and soil physical winter processes. We present the model and show how it was parameterized for timothy (Phleum pratense L.), the most important forage grass in Scandinavia and parts of North America and Asia. Uniquely, BASGRA simulates the processes taking place in the sward during the transition from summer to winter, including growth cessation and gradual cold hardening, and functions for simulating plant injury due to low temperatures, snow and ice affecting regrowth in spring. For the calibration, we used detailed data from five different locations in Norway, covering a wide range of agroclimatic regions, day lengths (latitudes from 59 degrees to 70 degrees N) and soil conditions. The total dataset included 11 variables, notably above-ground dry matter, leaf area index, tiller density, content of C reserves, and frost tolerance. All data were used in the calibration. When BASGRA was run with the maximum a-posteriori (MAP) parameter vector from the single, Bayesian calibration, nearly all measured variables were simulated to an overall normalized root mean squared error (NRMSE) <0.5. For many site x experiment combinations, NRMSE was <0.3. The temporal dynamics were captured well for most variables, as evaluated by comparing simulated time courses versus data for the individual sites. The results may suggest that BASGRA is a reasonably robust model, allowing for simulation of growth and several important underlying processes with acceptable accuracy for a range of agroclimatic conditions. However, the robustness of the model needs to be tested further using independent data from a wide range of growing conditions. Finally we show an example of application of the model, comparing overwintering risks in two climatically different sites, and discuss future model applications. Further development work should include improved simulation of the dynamics of C reserves, and validation of winter tiller dynamics against independent data. (C) 2016 Elsevier B.V. All rights reserved. |
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2016-07-28 |
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0304-3800 |
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CropM, LiveM, ft_macsur |
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MA @ admin @ |
Serial |
4764 |
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Author |
Van Oijen, M.; Höglind, M. |
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Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
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Journal Article |
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Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
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Volume |
207 |
Issue |
3 |
Pages |
627-643 |
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Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
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Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
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2016-10-31 |
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0014-2336 |
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CropM, ft_macsur |
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MA @ admin @ |
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4820 |
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Fronzek, S.; Pirttioja, N.; Carter, T.R.; Bindi, M.; Hoffmann, H.; Palosuo, T.; Ruiz-Ramos, M.; Tao, F.; Trnka, M.; Acutis, M.; Asseng, S.; Baranowski, P.; Basso, B.; Bodin, P.; Buis, S.; Cammarano, D.; Deligios, P.; Destain, M.-F.; Dumont, B.; Ewert, F.; Ferrise, R.; Francois, L.; Gaiser, T.; Hlavinka, P.; Jacquemin, I.; Kersebaum, K.C.; Kollas, C.; Krzyszczaki, J.; Lorite, I.J.; Minet, J.; Ines Minguez, M.; Montesino, M.; Moriondo, M.; Mueller, C.; Nendel, C.; Ozturk, I.; Perego, A.; Rodriguez, A.; Ruane, A.C.; Ruget, F.; Sanna, M.; Semenov, M.A.; Slawinski, C.; Stratonovitch, P.; Supit, I.; Waha, K.; Wang, E.; Wu, L.; Zhao, Z.; Rotter, R.P. |
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Title |
Classifying multi-model wheat yield impact response surfaces showing sensitivity to temperature and precipitation change |
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Journal Article |
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2018 |
Publication |
Agricultural Systems |
Abbreviated Journal |
Agric. Syst. |
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159 |
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209-224 |
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Keywords |
Classification; Climate change; Crop model; Ensemble; Sensitivity analysis; Wheat; Climate-Change; Crop Models; Probabilistic Assessment; Simulating; Impacts; British Catchments; Uncertainty; Europe; Productivity; Calibration; Adaptation |
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Crop growth simulation models can differ greatly in their treatment of key processes and hence in their response to environmental conditions. Here, we used an ensemble of 26 process-based wheat models applied at sites across a European transect to compare their sensitivity to changes in temperature (-2 to +9 degrees C) and precipitation (-50 to +50%). Model results were analysed by plotting them as impact response surfaces (IRSs), classifying the IRS patterns of individual model simulations, describing these classes and analysing factors that may explain the major differences in model responses. The model ensemble was used to simulate yields of winter and spring wheat at four sites in Finland, Germany and Spain. Results were plotted as IRSs that show changes in yields relative to the baseline with respect to temperature and precipitation. IRSs of 30-year means and selected extreme years were classified using two approaches describing their pattern. The expert diagnostic approach (EDA) combines two aspects of IRS patterns: location of the maximum yield (nine classes) and strength of the yield response with respect to climate (four classes), resulting in a total of 36 combined classes defined using criteria pre-specified by experts. The statistical diagnostic approach (SDA) groups IRSs by comparing their pattern and magnitude, without attempting to interpret these features. It applies a hierarchical clustering method, grouping response patterns using a distance metric that combines the spatial correlation and Euclidian distance between IRS pairs. The two approaches were used to investigate whether different patterns of yield response could be related to different properties of the crop models, specifically their genealogy, calibration and process description. Although no single model property across a large model ensemble was found to explain the integrated yield response to temperature and precipitation perturbations, the application of the EDA and SDA approaches revealed their capability to distinguish: (i) stronger yield responses to precipitation for winter wheat than spring wheat; (ii) differing strengths of response to climate changes for years with anomalous weather conditions compared to period-average conditions; (iii) the influence of site conditions on yield patterns; (iv) similarities in IRS patterns among models with related genealogy; (v) similarities in IRS patterns for models with simpler process descriptions of root growth and water uptake compared to those with more complex descriptions; and (vi) a closer correspondence of IRS patterns in models using partitioning schemes to represent yield formation than in those using a harvest index. Such results can inform future crop modelling studies that seek to exploit the diversity of multi-model ensembles, by distinguishing ensemble members that span a wide range of responses as well as those that display implausible behaviour or strong mutual similarities. |
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2018-01-25 |
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0308-521x |
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CropM, ft_macsur |
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MA @ admin @ |
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5186 |
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