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Pulina, A.; Lai, R.; Salis, L.; Seddaiu, G.; Roggero, P.P.; Bellocchi, G. |
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Modelling pasture production and soil temperature, water and carbon fluxes in Mediterranean grassland systems with the Pasture Simulation Model |
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Journal Article |
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2018 |
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Grass and Forage Science |
Abbreviated Journal |
Grass Forage Sci. |
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73 |
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2 |
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272-283 |
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grassland production; Mediterranean pastures; model calibration; PaSim; sheep grazing systems; soil respiration |
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Grasslands play important roles in agricultural production and provide a range of ecosystem services. Modelling can be a valuable adjunct to experimental research in order to improve the knowledge and assess the impact of management practices in grassland systems. In this study, the PaSim model was assessed for its ability to simulate plant biomass production, soil temperature, water content, and total and heterotrophic soil respiration in Mediterranean grasslands. The study site was the extensively managed sheep grazing system at the Berchidda‐Monti Observatory (Sardinia, Italy), from which two data sets were derived for model calibration and validation respectively. A new model parameterization was derived for Mediterranean conditions from a set of eco‐physiological parameters. With the exception of heterotrophic respiration (Rh), for which modelling efficiency (EF) values were negative, the model outputs were in agreement with observations (e.g., EF ranging from ~0.2 for total soil respiration to ~0.7 for soil temperature). These results support the effectiveness of PaSim to simulate C cycle components in Mediterranean grasslands. The study also highlights the need of further model development to provide better representation of the seasonal dynamics of Mediterranean annual species‐rich grasslands and associated peculiar Rh features, for which the modelling is only implicitly being undertaken by the current PaSim release. |
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LiveM, ft_macsur |
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MA @ admin @ |
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4973 |
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Hidy, D.; Barcza, Z.; Haszpra, L.; Churkina, G.; Pintér, K.; Nagy, Z. |
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Development of the Biome-BGC model for simulation of managed herbaceous ecosystems |
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Journal Article |
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2012 |
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Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
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226 |
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99-119 |
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biogeochemical model; biome-bgc; grassland; management; soil moisture; bayesian calibration; carbon flux model; regional applications; bayesian calibration; use efficiency; general-model; exchange; balance; climate; grassland; variability |
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Apart from measurements, numerical models are the most convenient instruments to analyze the carbon and water balance of terrestrial ecosystems and their interactions with changing environmental conditions. The process-based Biome-BGC model is widely used to simulate the storage and flux of water, carbon, and nitrogen within the vegetation, litter, and soil of unmanaged terrestrial ecosystems. Considering herbaceous vegetation related simulations with Biome-BGC, soil moisture and growing season control on ecosystem functioning is inaccurate due to the simple soil hydrology and plant phenology representation within the model. Consequently, Biome-BGC has limited applicability in herbaceous ecosystems because (1) they are usually managed; (2) they are sensitive to soil processes, most of all hydrology; and (3) their carbon balance is closely connected with the growing season length. Our aim was to improve the applicability of Biome-BGC for managed herbaceous ecosystems by implementing several new modules, including management. A new index (heatsum growing season index) was defined to accurately estimate the first and the final days of the growing season. Instead of a simple bucket soil sub-model, a multilayer soil sub-model was implemented, which can handle the processes of runoff, diffusion and percolation. A new module was implemented to simulate the ecophysiological effect of drought stress on plant mortality. Mowing and grazing modules were integrated in order to quantify the functioning of managed ecosystems. After modifications, the Biome-BGC model was calibrated and validated using eddy covariance-based measurement data collected in Hungarian managed grassland ecosystems. Model calibration was performed based on the Bayes theorem. As a result of these developments and calibration, the performance of the model was substantially improved. Comparison with measurement-based estimate showed that the start and the end of the growing season are now predicted with an average accuracy of 5 and 4 days instead of 46 and 85 days as in the original model. Regarding the different sites and modeled fluxes (gross primary production, total ecosystem respiration, evapotranspiration), relative errors were between 18-60% using the original model and 10-18% using the developed model; squares of the correlation coefficients were between 0.02-0.49 using the original model and 0.50-0.81 using the developed model. (c) 2011 Elsevier B.V. All rights reserved. |
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0304-3800 |
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LiveM |
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MA @ admin @ |
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4472 |
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Höglind, M.; Van Oijen, M.; Cameron, D.; Persson, T. |
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Process-based simulation of growth and overwintering of grassland using the BASGRA model |
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2016 |
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Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
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335 |
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1-15 |
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Cold hardening; Frost injury; Phleum pratense L.; Process-based; modelling; Winter survival; Yield; low-temperature tolerance; perennial forage crops; dry-matter; production; climate-change; nutritive-value; snow-cover; bayesian; calibration; timothy regrowth; phleum-pratense; lolium-perenne |
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Process-based models (PBM) for simulation of weather dependent grass growth can assist farmers and plant breeders in addressing the challenges of climate change by simulating alternative roads of adaptation. They can also provide management decision support under current conditions. A drawback of existing grass models is that they do not take into account the effect of winter stresses, limiting their use for full-year simulations in areas where winter survival is a key factor for yield security. Here, we present a novel full-year PBM for grassland named BASGRA. It was developed by combining the LINGRA grassland model (Van Oijen et al., 2005a) with models for cold hardening and soil physical winter processes. We present the model and show how it was parameterized for timothy (Phleum pratense L.), the most important forage grass in Scandinavia and parts of North America and Asia. Uniquely, BASGRA simulates the processes taking place in the sward during the transition from summer to winter, including growth cessation and gradual cold hardening, and functions for simulating plant injury due to low temperatures, snow and ice affecting regrowth in spring. For the calibration, we used detailed data from five different locations in Norway, covering a wide range of agroclimatic regions, day lengths (latitudes from 59 degrees to 70 degrees N) and soil conditions. The total dataset included 11 variables, notably above-ground dry matter, leaf area index, tiller density, content of C reserves, and frost tolerance. All data were used in the calibration. When BASGRA was run with the maximum a-posteriori (MAP) parameter vector from the single, Bayesian calibration, nearly all measured variables were simulated to an overall normalized root mean squared error (NRMSE) <0.5. For many site x experiment combinations, NRMSE was <0.3. The temporal dynamics were captured well for most variables, as evaluated by comparing simulated time courses versus data for the individual sites. The results may suggest that BASGRA is a reasonably robust model, allowing for simulation of growth and several important underlying processes with acceptable accuracy for a range of agroclimatic conditions. However, the robustness of the model needs to be tested further using independent data from a wide range of growing conditions. Finally we show an example of application of the model, comparing overwintering risks in two climatically different sites, and discuss future model applications. Further development work should include improved simulation of the dynamics of C reserves, and validation of winter tiller dynamics against independent data. (C) 2016 Elsevier B.V. All rights reserved. |
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2016-07-28 |
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0304-3800 |
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CropM, LiveM, ft_macsur |
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MA @ admin @ |
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4764 |
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Ben Touhami, H.; Bellocchi, G. |
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Bayesian calibration of the Pasture Simulation model (PaSim) to simulate European grasslands under water stress |
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Journal Article |
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2015 |
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Ecological Informatics |
Abbreviated Journal |
Ecological Informatics |
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30 |
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356-364 |
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Bayesian calibration framework; Grasslands; Pasture Simulation model; (PaSim); integrated assessment models; chain monte-carlo; climate-change; computation; impacts; vulnerability; likelihoods; france |
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As modeling becomes a more widespread practice in the agro-environmental sciences, scientists need reliable tools to calibrate models against ever more complex and detailed data. We present a generic Bayesian computation framework for grassland simulation, which enables parameter estimation in the Bayesian formalism by using Monte Carlo approaches. We outline the underlying rationale, discuss the computational issues, and provide results from an application of the Pasture Simulation model (PaSim) to three European grasslands. The framework was suited to investigate the challenging problem of calibrating complex biophysical models to data from altered scenarios generated by precipitation reduction (water stress conditions). It was used to infer the parameters of manipulated grassland systems and to assess the gain in uncertainty reduction by updating parameter distributions using measurements of the output variables. |
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1574-9541 |
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CropM, LiveM, ft_macsur |
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MA @ admin @ |
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4697 |
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Toscano, P.; Ranieri, R.; Matese, A.; Vaccari, F.P.; Gioli, B.; Zaldei, A.; Silvestri, M.; Ronchi, C.; La Cava, P.; Porter, J.R.; Miglietta, F. |
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Durum wheat modeling: The Delphi system, 11 years of observations in Italy |
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2012 |
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European Journal of Agronomy |
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European Journal of Agronomy |
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43 |
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108-118 |
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durum wheat; crop modeling; yield forecasting; calibration; scenarios; decision-support-system; crop simulation-model; ceres-wheat; mediterranean environment; winter-wheat; scaling-up; variability; quality; growth; water |
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► Delphi system, based on AFRCWHEAT2 model, for durum wheat forecast. ► AFRCWHEAT2 model was calibrated and validated for three years. ► A scenario approach was applied to simulation of durum wheat yield. ► Operational mode for eleven years in rainfed and water limiting conditions. ► Accurate forecast as an useful planning tool. Crop models are frequently used in ecology, agronomy and environmental sciences for simulating crop and environmental variables at a discrete time step. The aim of this work was to test the predictive capacity of the Delphi system, calibrated and determined for each pedoclimatic factor affecting durum wheat during phenological development. at regional scale. We present an innovative system capable of predicting spatial yield variation and temporal yield fluctuation in long-term analysis, that are the main purposes of regional crop simulation study. The Delphi system was applied to simulate growth and yield of durum wheat in the major Italian supply basins (Basilicata, Capitanata, Marche, Tuscany). The model was validated and evaluated for three years (1995-1997) at 11 experimental fields and then used in operational mode for eleven years (1999-2009), showing an excellent/good accuracy in predicting grain yield even before maturity for a wide range of growing conditions in the Mediterranean climate, governed by different annual weather patterns. The results were evaluated on the basis of regression and normalized root mean squared error with known crop yield statistics at regional level. (c) 2012 Elsevier B.V. All rights reserved. |
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1161-0301 |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4596 |
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