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Author |
Van Oijen, M.; Höglind, M. |
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Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
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Journal Article |
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Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
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Volume |
207 |
Issue |
3 |
Pages |
627-643 |
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Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
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Abstract |
Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
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2016-10-31 |
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0014-2336 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4820 |
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Author |
De Swaef, T.; Bellocchi, G.; Aper, J.; Lootens, P.; Roldan-Ruiz, I. |
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Title |
Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality |
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Journal Article |
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Year |
2019 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
70 |
Issue |
9 |
Pages |
2587-2604 |
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Keywords |
Breeding; grassland modelling; identifiability analysis; perennial; ryegrass; phenotyping; sensitivity analysis; pasture simulation-model; practical identifiability; crop; water; parameters; systems; carbon; uncertainty; sensitivity; emissions |
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Abstract |
Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized. |
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2020-02-14 |
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0022-0957 |
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LiveM, ft_macsur |
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MA @ admin @ |
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5231 |
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Author |
Kipling, R.P.; Virkajärvi, P.; Breitsameter, L.; Curnel, Y.; De Swaef, T.; Gustavsson, A.-M.; Hennart, S.; Höglind, M.; Järvenranta, K.; Minet, J.; Nendel, C.; Persson, T.; Picon-Cochard, C.; Rolinski, S.; Sandars, D.L.; Scollan, N.D.; Sebek, L.; Seddaiu, G.; Topp, C.F.E.; Twardy, S.; Van Middelkoop, J.; Wu, L.; Bellocchi, G. |
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Title |
Key challenges and priorities for modelling European grasslands under climate change |
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Journal Article |
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Year |
2016 |
Publication |
Science of the Total Environment |
Abbreviated Journal |
Science of the Total Environment |
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566-567 |
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Pages |
851-864 |
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Keywords |
Climate change; Grasslands; Horizon scanning; Livestock production; Models; Research agenda |
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Grassland-based ruminant production systems are integral to sustainable food production in Europe, converting plant materials indigestible to humans into nutritious food, while providing a range of environmental and cultural benefits. Climate change poses significant challenges for such systems, their productivity and the wider benefits they supply. In this context, grassland models have an important role in predicting and understanding the impacts of climate change on grassland systems, and assessing the efficacy of potential adaptation and mitigation strategies. In order to identify the key challenges for European grassland modelling under climate change, modellers and researchers from across Europe were consulted via workshop and questionnaire. Participants identified fifteen challenges and considered the current state of modelling and priorities for future research in relation to each. A review of literature was undertaken to corroborate and enrich the information provided during the horizon scanning activities. Challenges were in four categories relating to: 1) the direct and indirect effects of climate change on the sward 2) climate change effects on grassland systems outputs 3) mediation of climate change impacts by site, system and management and 4) cross-cutting methodological issues. While research priorities differed between challenges, an underlying theme was the need for accessible, shared inventories of models, approaches and data, as a resource for stakeholders and to stimulate new research. Developing grassland models to effectively support efforts to tackle climate change impacts, while increasing productivity and enhancing ecosystem services, will require engagement with stakeholders and policy-makers, as well as modellers and experimental researchers across many disciplines. The challenges and priorities identified are intended to be a resource 1) for grassland modellers and experimental researchers, to stimulate the development of new research directions and collaborative opportunities, and 2) for policy-makers involved in shaping the research agenda for European grassland modelling under climate change. |
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0048-9697 |
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LiveM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4761 |
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Author |
D’Ottavio, P.; Francioni, M.; Trozzo, L.; Sedic, E.; Budimir, K.; Avanzolini, P.; Trombetta, M.F.; Porqueddu, C.; Santilocchi, R.; Toderi, M. |
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Title |
Trends and approaches in the analysis of ecosystem services provided by grazing systems: A review |
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Journal Article |
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Year |
2018 |
Publication |
Grass and Forage Science |
Abbreviated Journal |
Grass Forage Sci. |
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Volume |
73 |
Issue |
1 |
Pages |
15-25 |
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Keywords |
climate regulation; food, habitat services; land degradation prevention; moderation of extreme events; natural (landscape) heritage; primary production; regulation of water flows; water quality regulation; Grassland Management; Plant-Communities; Land Degradation; Inner-Mongolia; Trade-Offs; Biodiversity; Provision; Impact; Consequences; Conservation |
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Abstract |
The ecosystem services (ES) approach is a framework for describing the benefits of nature to human well-being, and this has become a popular instrument for assessment and evaluation of ecosystems and their functions. Grazing lands can provide a wide array of ES that depend on their management practices and intensity. This article reviews the trends and approaches used in the analysis of some relevant ES provided by grazing systems, in line with the framework principles of the Millennium Ecosystem Assessment (MA). The scientific literature provides reports of many studies on ES in general, but the search here focused on grazing systems, which returned only sixty-two papers. This review of published papers highlights that: (i) in some papers, the concept of ES as defined by the MA is misunderstood (e.g., lack of anthropocentric vision); (ii) 34% of the papers dealt only with one ES, which neglects the need for the multisectoral approach suggested by the MA; (iii) few papers included stakeholder involvement to improve local decision-making processes; (iv) cultural ES have been poorly studied despite being considered the most relevant for local and general stakeholders; and (v) stakeholder awareness of well-being as provided by ES in grazing systems can foster both agri-environmental schemes and the willingness to pay for these services. |
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2018-03-02 |
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0142-5242 |
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Review |
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LiveM, ft_macsur |
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Call Number |
MA @ admin @ |
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5191 |
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Author |
Sándor, R.; Barcza, Z.; Hidy, D.; Lellei-Kovács, E.; Ma, S.; Bellocchi, G. |
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Title |
Modelling of grassland fluxes in Europe: evaluation of two biogeochemical models |
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Journal Article |
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Year |
2016 |
Publication |
Agriculture, Ecosystems and Environment |
Abbreviated Journal |
Agric. Ecosyst. Environ. |
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215 |
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1-19 |
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Keywords |
carbon-water fluxes; climate change; grasslands; model comparison; net ecosystem exchange; terrestrial carbon balance; pasture simulation-model; climate-change; nitrous-oxide; land-use; co2; photosynthesis; responses; water |
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Abstract |
Two independently developed simulation models – the grassland-specific PaSim and the biome-generic Biome-BGC MuSo (BBGC MuSo) – linking climate, soil, vegetation and management to ecosystem biogeochemical cycles were compared in a simulation of carbon (C) and water fluxes. The results were assessed against eddy-covariance flux data from five observational grassland sites representing a range of conditions in Europe: Grillenburg in Germany, Laqueuille in France with both extensive and intensive management, Monte Bondone in Italy and Oensingen in Switzerland. Model comparison (after calibration) gave substantial agreement, the performances being marginal to acceptable for weekly-aggregated gross primary production and ecosystem respiration (R-2 similar to 0.66 – 0.91), weekly evapotranspiration (R-2 similar to 0.78 – 0.94), soil water content in the topsoil (R-2 similar to 0.1 -0.7) and soil temperature (R-2 similar to 0.88 – 0.96). The bias was limited to the range -13 to 9 g C m(-2) week(-1) for C fluxes (-11 to 8 g C m(-2) week(-1) in case of BBGC MuSo, and -13 to 9 g C m(-2) week(-1) in case of PaSim) and -4 to 6 mm week for water fluxes (with BBGC MuSo providing somewhat higher estimates than PaSim), but some higher relative root mean square errors indicate low accuracy for prediction, especially for net ecosystem exchange The sensitivity of simulated outputs to changes in atmospheric carbon dioxide concentration ([CO2]), temperature and precipitation indicate, with certain agreement between the two models, that C outcomes are dominated by [CO2] and temperature gradients, and are less due to precipitation. ET rates decrease with increasing [CO2] in PaSim (consistent with experimental knowledge), while lack of appropriate stomatal response could be a limit in BBGC MuSo responsiveness. Results of the study indicate that some of the errors might be related to the improper representation of soil water content and soil temperature. Improvement is needed in the model representations of soil processes (especially soil water balance) that strongly influence the biogeochemical cycles of managed and unmanaged grasslands. (C) 2015 Elsevier B.V. All rights reserved. |
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2016-10-31 |
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0167-8809 |
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Notes |
CropM, LiveM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4808 |
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