| Records |
| Author |
Stefańczyk, E.; Sobkowiak, S.; Brylińska, M.; Śliwka, J. |
| Title |
Diversity of Fusarium spp. associated with dry rot of potato tubers in Poland |
Type |
Journal Article |
| Year |
2016 |
Publication |
European Journal of Plant Pathology |
Abbreviated Journal |
Eur. J. Plant Pathol. |
| Volume |
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Issue |
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Pages |
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| Keywords |
ITS; mycotoxin; pathogenicity; Solanum tuberosum; tef-1α; β-tubulin; sequence data; Trichothecenes; identification; fungus; pathogenicity; temperature; sensitivity; zearalenone; strains; disease |
| Abstract |
Fusarium spp. belong to the division Ascomycota and cause important plant diseases; these fungi may contaminate food products with mycotoxins, endangering human and animal health. Several Fusarium spp. have been associated with potato dry rot. The most frequent and devastating of these species are F. sambucinum, F. solani and F. oxysporum, depending on the geographic location and the season. Samples of potato tubers with dry rot symptoms were collected, and their putative fungal isolates were identified as Fusarium species using partial nucleotide sequences of the internal transcribed spacer, translation elongation factor 1-α and β-tubulin genes. Among 149 isolates, 12 species were identified. F. oxysporum was the most frequent (45 % of the isolates), followed by F. avenaceum (12.1 %), F. solani (10.7 %) and F. sambucinum (7.4 %). Phylogenetic analyses confirmed the species identifications and revealed a high diversity of F. solani and a low diversity of F. oxysporum. Potential producers of zearalenone and trichothecenes were identified within the obtained isolates using PCR markers. Isolates that were pathogenic to potatoes in laboratory tests were found in four species: F. sambucinum, F. avenaceum, F. culmorum, and F. graminearum. The effects of increased temperature and mixed inoculum on the pathogenicities of chosen species were evaluated. This study adds 434 potato-derived Fusarium sequences to the NCBI GenBank database and demonstrates that the list of Fusarium species and mycotoxins present in potato tubers may be richer than previously believed, regardless of whether these species cause dry rot or live as saprophytes. |
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English |
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0929-1873 1573-8469 |
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Article |
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CropM, ft_macsur |
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no |
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MA @ admin @ |
Serial |
4721 |
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| Author |
Zhao, G.; Hoffmann, H.; van Bussel, L.G.J.; Enders, A.; Specka, X.; Sosa, C.; Yeluripati, J.; Tao, F.L.; Constantin, J.; Raynal, H.; Teixeira, E.; Grosz, B.; Doro, L.; Zhao, Z.G.; Nendel, C.; Kiese, R.; Eckersten, H.; Haas, E.; Vanuytrecht, E.; Wang, E.; Kuhnert, M.; Trombi, G.; Moriondo, M.; Bindi, M.; Lewan, E.; Bach, M.; Kersebaum, K.C.; Rotter, R.; Roggero, P.P.; Wallach, D.; Cammarano, D.; Asseng, S.; Krauss, G.; Siebert, S.; Gaiser, T.; Ewert, F. |
| Title |
Effect of weather data aggregation on regional crop simulation for different crops, production conditions, and response variables |
Type |
Journal Article |
| Year |
2015 |
Publication |
Climate Research |
Abbreviated Journal |
Clim. Res. |
| Volume |
65 |
Issue |
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Pages |
141-157 |
| Keywords |
crop model; model comparison; spatial resolution; data aggregation; spatial heterogeneity; scaling; climate-change scenarios; sub-saharan africa; winter-wheat; spatial-resolution; yield response; input data; systems simulation; large-scale; soil data; part i |
| Abstract |
We assessed the weather data aggregation effect (DAE) on the simulation of cropping systems for different crops, response variables, and production conditions. Using 13 process-based crop models and the ensemble mean, we simulated 30 yr continuous cropping systems for 2 crops (winter wheat and silage maize) under 3 production conditions for the state of North Rhine-Westphalia, Germany. The DAE was evaluated for 5 weather data resolutions (i.e. 1, 10, 25, 50, and 100 km) for 3 response variables including yield, growing season evapotranspiration, and water use efficiency. Five metrics, viz. the spatial bias (Delta), average absolute deviation (AAD), relative AAD, root mean squared error (RMSE), and relative RMSE, were used to evaluate the DAE on both the input weather data and simulated results. For weather data, we found that data aggregation narrowed the spatial variability but widened the., especially across mountainous areas. The DAE on loss of spatial heterogeneity and hotspots was stronger than on the average changes over the region. The DAE increased when coarsening the spatial resolution of the input weather data. The DAE varied considerably across different models, but changed only slightly for different production conditions and crops. We conclude that if spatially detailed information is essential for local management decision, higher resolution is desirable to adequately capture the spatial variability for heterogeneous regions. The required resolution depends on the choice of the model as well as the environmental condition of the study area. |
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0936-577x |
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CropM, ft_macsur |
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no |
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MA @ admin @ |
Serial |
4754 |
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Hoffmann, H.; Zhao, G.; van Bussel, L.G.J.; Enders, A.; Specka, X.; Sosa, C.; Yeluripati, J.; Tao, F.; Constantin, J.; Raynal, H.; Teixeira, E.; Grosz, B.; Doro, L.; Zhao, Z.; Wang, E.; Nendel, C.; Kersebaum, K.C.; Haas, E.; Kiese, R.; Klatt, S.; Eckersten, H.; Vanuytrecht, E.; Kuhnert, M.; Lewan, E.; Rötter, R.; Roggero, P.P.; Wallach, D.; Cammarano, D.; Asseng, S.; Krauss, G.; Siebert, S.; Gaiser, T.; Ewert, F. |
| Title |
Variability of effects of spatial climate data aggregation on regional yield simulation by crop models |
Type |
Journal Article |
| Year |
2015 |
Publication |
Climate Research |
Abbreviated Journal |
Clim. Res. |
| Volume |
65 |
Issue |
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Pages |
53-69 |
| Keywords |
spatial aggregation effects; crop simulation model; input data; scaling; variability; yield simulation; model comparison; input data aggregation; systems simulation; nitrogen dynamics; data resolution; n2o emissions; winter-wheat; scale; water; impact; apsim |
| Abstract |
Field-scale crop models are often applied at spatial resolutions coarser than that of the arable field. However, little is known about the response of the models to spatially aggregated climate input data and why these responses can differ across models. Depending on the model, regional yield estimates from large-scale simulations may be biased, compared to simulations with high-resolution input data. We evaluated this so-called aggregation effect for 13 crop models for the region of North Rhine-Westphalia in Germany. The models were supplied with climate data of 1 km resolution and spatial aggregates of up to 100 km resolution raster. The models were used with 2 crops (winter wheat and silage maize) and 3 production situations (potential, water-limited and nitrogen-water-limited growth) to improve the understanding of errors in model simulations related to data aggregation and possible interactions with the model structure. The most important climate variables identified in determining the model-specific input data aggregation on simulated yields were mainly related to changes in radiation (wheat) and temperature (maize). Additionally, aggregation effects were systematic, regardless of the extent of the effect. Climate input data aggregation changed the mean simulated regional yield by up to 0.2 t ha(-1), whereas simulated yields from single years and models differed considerably, depending on the data aggregation. This implies that large-scale crop yield simulations are robust against climate data aggregation. However, large-scale simulations can be systematically biased when being evaluated at higher temporal or spatial resolution depending on the model and its parameterization. |
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0936-577x 1616-1572 |
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CropM, ft_macsur |
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no |
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MA @ admin @ |
Serial |
4694 |
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Rosenzweig, C.; Elliott, J.; Deryng, D.; Ruane, A.C.; Müller, C.; Arneth, A.; Boote, K.J.; Folberth, C.; Glotter, M.; Khabarov, N.; Neumann, K.; Piontek, F.; Pugh, T.A.; Schmid, E.; Stehfest, E.; Yang, H.; Jones, J.W. |
| Title |
Assessing agricultural risks of climate change in the 21st century in a global gridded crop model intercomparison |
Type |
Journal Article |
| Year |
2014 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U. S. A. |
| Volume |
111 |
Issue |
9 |
Pages |
3268-3273 |
| Keywords |
Agriculture/*methods/statistics & numerical data; *Climate Change; Computer Simulation; Crops, Agricultural/*growth & development; Forecasting; Geography; *Models, Theoretical; Nitrogen/*analysis; Risk Assessment; Temperature; AgMIP; Isi-mip; agriculture; climate impacts; food security |
| Abstract |
Here we present the results from an intercomparison of multiple global gridded crop models (GGCMs) within the framework of the Agricultural Model Intercomparison and Improvement Project and the Inter-Sectoral Impacts Model Intercomparison Project. Results indicate strong negative effects of climate change, especially at higher levels of warming and at low latitudes; models that include explicit nitrogen stress project more severe impacts. Across seven GGCMs, five global climate models, and four representative concentration pathways, model agreement on direction of yield changes is found in many major agricultural regions at both low and high latitudes; however, reducing uncertainty in sign of response in mid-latitude regions remains a challenge. Uncertainties related to the representation of carbon dioxide, nitrogen, and high temperature effects demonstrated here show that further research is urgently needed to better understand effects of climate change on agricultural production and to devise targeted adaptation strategies. |
| Address |
2016-10-31 |
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English |
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1091-6490 (Electronic) 0027-8424 (Linking) |
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CropM |
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no |
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MA @ admin @ |
Serial |
4801 |
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Kuhnert, M.; Yeluripati, J.; Smith, P.; Hoffmann, H.; van Oijen, M.; Constantin, J.; Coucheney, E.; Dechow, R.; Eckersten, H.; Gaiser, T.; Grosz, B.; Haas, E.; Kersebaum, K.-C.; Kiese, R.; Klatt, S.; Lewan, E.; Nendel, C.; Raynal, H.; Sosa, C.; Specka, X.; Teixeira, E.; Wang, E.; Weihermüller, L.; Zhao, G.; Zhao, Z.; Ogle, S.; Ewert, F. |
| Title |
Impact analysis of climate data aggregation at different spatial scales on simulated net primary productivity for croplands |
Type |
Journal Article |
| Year |
2016 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
European Journal of Agronomy |
| Volume |
88 |
Issue |
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Pages |
41-52 |
| Keywords |
Net primary production; NPP; Scaling; Extreme events; Crop modelling; Climate Data; aggregation |
| Abstract |
For spatial crop and agro-systems modelling, there is often a discrepancy between the scale of measured driving data and the target resolution. Spatial data aggregation is often necessary, which can introduce additional uncertainty into the simulation results. Previous studies have shown that climate data aggregation has little effect on simulation of phenological stages, but effects on net primary production (NPP) might still be expected through changing the length of the growing season and the period of grain filling. This study investigates the impact of spatial climate data aggregation on NPP simulation results, applying eleven different models for the same study region (∼34,000 km2), situated in Western Germany. To isolate effects of climate, soil data and management were assumed to be constant over the entire study area and over the entire study period of 29 years. Two crops, winter wheat and silage maize, were tested as monocultures. Compared to the impact of climate data aggregation on yield, the effect on NPP is in a similar range, but is slightly lower, with only small impacts on averages over the entire simulation period and study region. Maximum differences between the five scales in the range of 1–100 km grid cells show changes of 0.4–7.8% and 0.0–4.8% for wheat and maize, respectively, whereas the simulated potential NPP averages of the models show a wide range (1.9–4.2 g C m−2 d−1 and 2.7–6.1 g C m−2 d−1for wheat and maize, respectively). The impact of the spatial aggregation was also tested for shorter time periods, to see if impacts over shorter periods attenuate over longer periods. The results show larger impacts for single years (up to 9.4% for wheat and up to 13.6% for maize). An analysis of extreme weather conditions shows an aggregation effect in vulnerability up to 12.8% and 15.5% between the different resolutions for wheat and maize, respectively. Simulations of NPP averages over larger areas (e.g. regional scale) and longer time periods (several years) are relatively insensitive to climate data. |
| Address |
2016-09-13 |
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English |
Summary Language |
Newsletter July |
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1161-0301 |
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CropM, ft_macsur |
Approved |
no |
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MA @ admin @ |
Serial |
4775 |
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