| Records |
| Author |
Korhonen, P.; Palosuo, T.; Persson, T.; Höglind, M.; Jego, G.; Van Oijen, M.; Gustavsson, A.-M.; Belanger, G.; Virkajärvi, P. |
Title  |
Modelling grass yields in northern climates – a comparison of three growth models for timothy |
Type |
Journal Article |
| Year |
2018 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
| Volume |
224 |
Issue |
|
Pages |
37-47 |
| Keywords |
Forage grass; Model comparison; Timothy; Uncertainty; Yield; Nutritive-Value; Catimo Model; Nitrogen Balances; Simulation; Regrowth; Wheat; Stics; Dynamics; Harvest; Water |
| Abstract |
During the past few years, several studies have compared the performance of crop simulation models to assess the uncertainties in model-based climate change impact assessments and other modelling studies. Many of these studies have concentrated on cereal crops, while fewer model comparisons have been conducted for grasses. We compared the predictions for timothy grass (Phleum pratertse L.) yields for first and second cuts along with the dynamics of above-ground biomass for the grass simulation models BASGRA and CATIMO, and the soil -crop model STICS. The models were calibrated and evaluated using field data from seven sites across Northern Europe and Canada with different climates, soil conditions and management practices. Altogether the models were compared using data on timothy grass from 33 combinations of sites, cultivars and management regimes. Model performances with two calibration approaches, cultivar-specific and generic calibrations, were compared. All the models studied estimated the dynamics of above-ground biomass and the leaf area index satisfactorily, but tended to underestimate the first cut yield. Cultivar-specific calibration resulted in more accurate first cut yield predictions than the generic calibration achieving root mean square errors approximately one third lower for the cultivar-specific calibration. For the second cut, the difference between the calibration methods was small. The results indicate that detailed soil process descriptions improved the overall model performance and the model responses to management, such as nitrogen applications. The results also suggest that taking the genetic variability into account between cultivars of timothy grass also improves the yield estimates. Calibrations using both spring and summer growth data simultaneously revealed that processes determining the growth in these two periods require further attention in model development. |
| Address |
2018-07-12 |
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English |
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Edition |
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| ISSN |
0378-4290 |
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| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
5206 |
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| Author |
Virkajärvi, P.; Korhonen, P.; Bellocchi, G.; Curnel, Y.; Wu, L.; Jégo, G.; Persson, T.; Höglind, M.; Van Oijen, M.; Gustavsson, A.-M.; Kipling, R.P. |
| Title |
Modelling responses of forages to climate change with a focus on nutritive value |
Type |
Journal Article |
| Year |
2016 |
Publication |
Advances in Animal Biosciences |
Abbreviated Journal |
Advances in Animal Biosciences |
| Volume |
7 |
Issue |
03 |
Pages |
227-228 |
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Edition |
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| ISSN |
2040-4700 |
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| Notes |
LiveM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4876 |
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| Author |
Höglind, M.; Van Oijen, M.; Cameron, D.; Persson, T. |
| Title |
Process-based simulation of growth and overwintering of grassland using the BASGRA model |
Type |
Journal Article |
| Year |
2016 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
| Volume |
335 |
Issue |
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Pages |
1-15 |
| Keywords |
Cold hardening; Frost injury; Phleum pratense L.; Process-based; modelling; Winter survival; Yield; low-temperature tolerance; perennial forage crops; dry-matter; production; climate-change; nutritive-value; snow-cover; bayesian; calibration; timothy regrowth; phleum-pratense; lolium-perenne |
| Abstract |
Process-based models (PBM) for simulation of weather dependent grass growth can assist farmers and plant breeders in addressing the challenges of climate change by simulating alternative roads of adaptation. They can also provide management decision support under current conditions. A drawback of existing grass models is that they do not take into account the effect of winter stresses, limiting their use for full-year simulations in areas where winter survival is a key factor for yield security. Here, we present a novel full-year PBM for grassland named BASGRA. It was developed by combining the LINGRA grassland model (Van Oijen et al., 2005a) with models for cold hardening and soil physical winter processes. We present the model and show how it was parameterized for timothy (Phleum pratense L.), the most important forage grass in Scandinavia and parts of North America and Asia. Uniquely, BASGRA simulates the processes taking place in the sward during the transition from summer to winter, including growth cessation and gradual cold hardening, and functions for simulating plant injury due to low temperatures, snow and ice affecting regrowth in spring. For the calibration, we used detailed data from five different locations in Norway, covering a wide range of agroclimatic regions, day lengths (latitudes from 59 degrees to 70 degrees N) and soil conditions. The total dataset included 11 variables, notably above-ground dry matter, leaf area index, tiller density, content of C reserves, and frost tolerance. All data were used in the calibration. When BASGRA was run with the maximum a-posteriori (MAP) parameter vector from the single, Bayesian calibration, nearly all measured variables were simulated to an overall normalized root mean squared error (NRMSE) <0.5. For many site x experiment combinations, NRMSE was <0.3. The temporal dynamics were captured well for most variables, as evaluated by comparing simulated time courses versus data for the individual sites. The results may suggest that BASGRA is a reasonably robust model, allowing for simulation of growth and several important underlying processes with acceptable accuracy for a range of agroclimatic conditions. However, the robustness of the model needs to be tested further using independent data from a wide range of growing conditions. Finally we show an example of application of the model, comparing overwintering risks in two climatically different sites, and discuss future model applications. Further development work should include improved simulation of the dynamics of C reserves, and validation of winter tiller dynamics against independent data. (C) 2016 Elsevier B.V. All rights reserved. |
| Address |
2016-07-28 |
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English |
Summary Language |
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Abbreviated Series Title |
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| Series Volume |
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Series Issue |
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Edition |
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| ISSN |
0304-3800 |
ISBN |
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Medium |
Article |
| Area |
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Expedition |
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Conference |
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| Notes |
CropM, LiveM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4764 |
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| Author |
Hjelkrem, A.-G.R.; Höglind, M.; van Oijen, M.; Schellberg, J.; Gaiser, T.; Ewert, F. |
| Title |
Sensitivity analysis and Bayesian calibration for testing robustness of the BASGRA model in different environments |
Type |
Journal Article |
| Year |
2017 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
| Volume |
359 |
Issue |
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Pages |
80-91 |
| Keywords |
Metropolis-hasting; Morris method; Reducing complexity; Robustness |
| Abstract |
Highlights • The parameters to be fixed were consistent across sites. • Model calibration must be performed separately for each specific case. • Possible to reduce model parameters from 66 to 45. • Strong model reductions must be avoided. • The error term for the training data were characterised by timing (phase shift). Abstract Proper parameterisation and quantification of model uncertainty are two essential tasks in improvement and assessment of model performance. Bayesian calibration is a method that combines both tasks by quantifying probability distributions for model parameters and outputs. However, the method is rarely applied to complex models because of its high computational demand when used with high-dimensional parameter spaces. We therefore combined Bayesian calibration with sensitivity analysis, using the screening method by Morris (1991), in order to reduce model complexity by fixing parameters to which model output was only weakly sensitive to a nominal value. Further, the robustness of the model with respect to reduction in the number of free parameters were examined according to model discrepancy and output uncertainty. The process-based grassland model BASGRA was examined in the present study on two sites in Norway and in Germany, for two grass species (Phleum pratense and Arrhenatherum elatius). According to this study, a reduction of free model parameters from 66 to 45 was possible. The sensitivity analysis showed that the parameters to be fixed were consistent across sites (which differed in climate and soil conditions), while model calibration had to be performed separately for each combination of site and species. The output uncertainty decreased slightly, but still covered the field observations of aboveground biomass. Considering the training data, the mean square error for both the 66 and the 45 parameter model was dominated by errors in timing (phase shift), whereas no general pattern was found in errors when using the validation data. Stronger model reduction should be avoided, as the error term increased and output uncertainty was underestimated. |
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Series Title |
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Abbreviated Series Title |
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| Series Volume |
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Series Issue |
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Edition |
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| ISSN |
0304-3800 |
ISBN |
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Medium |
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| Area |
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Expedition |
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Conference |
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| Notes |
CropM, LiveM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
5010 |
| Permanent link to this record |
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| Author |
Van Oijen, M.; Höglind, M. |
| Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
Type |
Journal Article |
| Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
| Volume |
207 |
Issue |
3 |
Pages |
627-643 |
| Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
| Abstract |
Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
| Address |
2016-10-31 |
| Corporate Author |
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Place of Publication |
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| Language |
English |
Summary Language |
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Original Title |
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Series Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
0014-2336 |
ISBN |
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Article |
| Area |
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Expedition |
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Conference |
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| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4820 |
| Permanent link to this record |
