| Records |
| Author |
Hjelkrem, A.-G.R.; Höglind, M.; van Oijen, M.; Schellberg, J.; Gaiser, T.; Ewert, F. |
| Title |
Sensitivity analysis and Bayesian calibration for testing robustness of the BASGRA model in different environments |
Type |
Journal Article |
| Year |
2017 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
| Volume |
359 |
Issue  |
|
Pages |
80-91 |
| Keywords |
Metropolis-hasting; Morris method; Reducing complexity; Robustness |
| Abstract |
Highlights • The parameters to be fixed were consistent across sites. • Model calibration must be performed separately for each specific case. • Possible to reduce model parameters from 66 to 45. • Strong model reductions must be avoided. • The error term for the training data were characterised by timing (phase shift). Abstract Proper parameterisation and quantification of model uncertainty are two essential tasks in improvement and assessment of model performance. Bayesian calibration is a method that combines both tasks by quantifying probability distributions for model parameters and outputs. However, the method is rarely applied to complex models because of its high computational demand when used with high-dimensional parameter spaces. We therefore combined Bayesian calibration with sensitivity analysis, using the screening method by Morris (1991), in order to reduce model complexity by fixing parameters to which model output was only weakly sensitive to a nominal value. Further, the robustness of the model with respect to reduction in the number of free parameters were examined according to model discrepancy and output uncertainty. The process-based grassland model BASGRA was examined in the present study on two sites in Norway and in Germany, for two grass species (Phleum pratense and Arrhenatherum elatius). According to this study, a reduction of free model parameters from 66 to 45 was possible. The sensitivity analysis showed that the parameters to be fixed were consistent across sites (which differed in climate and soil conditions), while model calibration had to be performed separately for each combination of site and species. The output uncertainty decreased slightly, but still covered the field observations of aboveground biomass. Considering the training data, the mean square error for both the 66 and the 45 parameter model was dominated by errors in timing (phase shift), whereas no general pattern was found in errors when using the validation data. Stronger model reduction should be avoided, as the error term increased and output uncertainty was underestimated. |
| Address |
|
| Corporate Author |
|
Thesis |
|
| Publisher |
|
Place of Publication |
|
Editor |
|
| Language |
|
Summary Language |
|
Original Title |
|
| Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
| Series Volume |
|
Series Issue |
|
Edition |
|
| ISSN |
0304-3800 |
ISBN |
|
Medium |
|
| Area |
|
Expedition |
|
Conference |
|
| Notes |
CropM, LiveM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
5010 |
| Permanent link to this record |
| |
|
| |
| Author |
Korhonen, P.; Palosuo, T.; Höglind, M.; Persson, T.; van Oijen, M.; Jego, G.; Virkajärvi, P.; Belanger, G.; Gustavsson, A.M. |
| Title |
Intercomparison of models for simulating timothy yield in Northern countries. The multiple roles of grassland in the European bioeconomy |
Type |
Conference Article |
| Year |
2016 |
Publication |
|
Abbreviated Journal |
|
| Volume |
|
Issue |
|
Pages |
|
| Keywords |
|
| Abstract |
|
| Address |
|
| Corporate Author |
|
Thesis |
|
| Publisher |
|
Place of Publication |
Trondheim, Norway |
Editor |
|
| Language |
|
Summary Language |
|
Original Title |
|
| Series Editor |
|
Series Title |
|
Abbreviated Series Title |
General Meeting of the European Grassland Federation |
| Series Volume |
26 |
Series Issue |
|
Edition |
|
| ISSN |
|
ISBN |
|
Medium |
|
| Area |
|
Expedition |
|
Conference |
General Meeting of the European Grassland Federation, 2016-09-04 to 2016-09-08, Trondheim, Norway 26: |
| Notes |
|
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
5168 |
| Permanent link to this record |
| |
|
| |
| Author |
Korhonen, P.; Palosuo, T.; Persson, T.; Höglind, M.; Jego, G.; Van Oijen, M.; Gustavsson, A.-M.; Belanger, G.; Virkajärvi, P. |
| Title |
Modelling grass yields in northern climates – a comparison of three growth models for timothy |
Type |
Journal Article |
| Year |
2018 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
| Volume |
224 |
Issue |
|
Pages |
37-47 |
| Keywords |
Forage grass; Model comparison; Timothy; Uncertainty; Yield; Nutritive-Value; Catimo Model; Nitrogen Balances; Simulation; Regrowth; Wheat; Stics; Dynamics; Harvest; Water |
| Abstract |
During the past few years, several studies have compared the performance of crop simulation models to assess the uncertainties in model-based climate change impact assessments and other modelling studies. Many of these studies have concentrated on cereal crops, while fewer model comparisons have been conducted for grasses. We compared the predictions for timothy grass (Phleum pratertse L.) yields for first and second cuts along with the dynamics of above-ground biomass for the grass simulation models BASGRA and CATIMO, and the soil -crop model STICS. The models were calibrated and evaluated using field data from seven sites across Northern Europe and Canada with different climates, soil conditions and management practices. Altogether the models were compared using data on timothy grass from 33 combinations of sites, cultivars and management regimes. Model performances with two calibration approaches, cultivar-specific and generic calibrations, were compared. All the models studied estimated the dynamics of above-ground biomass and the leaf area index satisfactorily, but tended to underestimate the first cut yield. Cultivar-specific calibration resulted in more accurate first cut yield predictions than the generic calibration achieving root mean square errors approximately one third lower for the cultivar-specific calibration. For the second cut, the difference between the calibration methods was small. The results indicate that detailed soil process descriptions improved the overall model performance and the model responses to management, such as nitrogen applications. The results also suggest that taking the genetic variability into account between cultivars of timothy grass also improves the yield estimates. Calibrations using both spring and summer growth data simultaneously revealed that processes determining the growth in these two periods require further attention in model development. |
| Address |
2018-07-12 |
| Corporate Author |
|
Thesis |
|
| Publisher |
|
Place of Publication |
|
Editor |
|
| Language |
English |
Summary Language |
|
Original Title |
|
| Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
| Series Volume |
|
Series Issue |
|
Edition |
|
| ISSN |
0378-4290 |
ISBN |
|
Medium |
|
| Area |
|
Expedition |
|
Conference |
|
| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
5206 |
| Permanent link to this record |
| |
|
| |
| Author |
Virkajärvi, P.; Korhonen, P.; Bellocchi, G.; Curnel, Y.; Wu, L.; Jégo, G.; Persson, T.; Höglind, M.; Van Oijen, M.; Gustavsson, A.-M.; Kipling, R.P. |
| Title |
Modelling responses of forages to climate change with a focus on nutritive value |
Type |
Journal Article |
| Year |
2016 |
Publication |
Advances in Animal Biosciences |
Abbreviated Journal |
Advances in Animal Biosciences |
| Volume |
7 |
Issue |
03 |
Pages |
227-228 |
| Keywords |
|
| Abstract |
|
| Address |
|
| Corporate Author |
|
Thesis |
|
| Publisher |
|
Place of Publication |
|
Editor |
|
| Language |
|
Summary Language |
|
Original Title |
|
| Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
| Series Volume |
|
Series Issue |
|
Edition |
|
| ISSN |
2040-4700 |
ISBN |
|
Medium |
|
| Area |
|
Expedition |
|
Conference |
|
| Notes |
LiveM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4876 |
| Permanent link to this record |
| |
|
| |
| Author |
Van Oijen, M.; Höglind, M. |
| Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
Type |
Journal Article |
| Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
| Volume |
207 |
Issue |
3 |
Pages |
627-643 |
| Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
| Abstract |
Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
| Address |
2016-10-31 |
| Corporate Author |
|
Thesis |
|
| Publisher |
|
Place of Publication |
|
Editor |
|
| Language |
English |
Summary Language |
|
Original Title |
|
| Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
| Series Volume |
|
Series Issue |
|
Edition |
|
| ISSN |
0014-2336 |
ISBN |
|
Medium |
Article |
| Area |
|
Expedition |
|
Conference |
|
| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4820 |
| Permanent link to this record |
