| Records |
| Author |
Van Oijen, M.; Höglind, M. |
| Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
Type |
Journal Article |
| Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
| Volume |
207 |
Issue  |
3 |
Pages |
627-643 |
| Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
| Abstract |
Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
| Address |
2016-10-31 |
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| Language |
English |
Summary Language |
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| ISSN |
0014-2336 |
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Article |
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| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4820 |
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| Author |
Virkajärvi, P.; Korhonen, P.; Bellocchi, G.; Curnel, Y.; Wu, L.; Jégo, G.; Persson, T.; Höglind, M.; Van Oijen, M.; Gustavsson, A.-M.; Kipling, R.P. |
| Title |
Modelling responses of forages to climate change with a focus on nutritive value |
Type |
Journal Article |
| Year |
2016 |
Publication |
Advances in Animal Biosciences |
Abbreviated Journal |
Advances in Animal Biosciences |
| Volume |
7 |
Issue |
03 |
Pages |
227-228 |
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Series Issue |
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Edition |
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| ISSN |
2040-4700 |
ISBN |
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Conference |
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| Notes |
LiveM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4876 |
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| Author |
Kuhnert, M.; Yeluripati, J.; Smith, P.; Hoffmann, H.; van Oijen, M.; Constantin, J.; Coucheney, E.; Dechow, R.; Eckersten, H.; Gaiser, T.; Grosz, B.; Haas, E.; Kersebaum, K.-C.; Kiese, R.; Klatt, S.; Lewan, E.; Nendel, C.; Raynal, H.; Sosa, C.; Specka, X.; Teixeira, E.; Wang, E.; Weihermüller, L.; Zhao, G.; Zhao, Z.; Ogle, S.; Ewert, F. |
| Title |
Impact analysis of climate data aggregation at different spatial scales on simulated net primary productivity for croplands |
Type |
Journal Article |
| Year |
2016 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
European Journal of Agronomy |
| Volume |
88 |
Issue |
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Pages |
41-52 |
| Keywords |
Net primary production; NPP; Scaling; Extreme events; Crop modelling; Climate Data; aggregation |
| Abstract |
For spatial crop and agro-systems modelling, there is often a discrepancy between the scale of measured driving data and the target resolution. Spatial data aggregation is often necessary, which can introduce additional uncertainty into the simulation results. Previous studies have shown that climate data aggregation has little effect on simulation of phenological stages, but effects on net primary production (NPP) might still be expected through changing the length of the growing season and the period of grain filling. This study investigates the impact of spatial climate data aggregation on NPP simulation results, applying eleven different models for the same study region (∼34,000 km2), situated in Western Germany. To isolate effects of climate, soil data and management were assumed to be constant over the entire study area and over the entire study period of 29 years. Two crops, winter wheat and silage maize, were tested as monocultures. Compared to the impact of climate data aggregation on yield, the effect on NPP is in a similar range, but is slightly lower, with only small impacts on averages over the entire simulation period and study region. Maximum differences between the five scales in the range of 1–100 km grid cells show changes of 0.4–7.8% and 0.0–4.8% for wheat and maize, respectively, whereas the simulated potential NPP averages of the models show a wide range (1.9–4.2 g C m−2 d−1 and 2.7–6.1 g C m−2 d−1for wheat and maize, respectively). The impact of the spatial aggregation was also tested for shorter time periods, to see if impacts over shorter periods attenuate over longer periods. The results show larger impacts for single years (up to 9.4% for wheat and up to 13.6% for maize). An analysis of extreme weather conditions shows an aggregation effect in vulnerability up to 12.8% and 15.5% between the different resolutions for wheat and maize, respectively. Simulations of NPP averages over larger areas (e.g. regional scale) and longer time periods (several years) are relatively insensitive to climate data. |
| Address |
2016-09-13 |
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| Language |
English |
Summary Language |
Newsletter July |
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Edition |
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| ISSN |
1161-0301 |
ISBN |
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Article |
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Conference |
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| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4775 |
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| Author |
Van Oijen, M.; Cameron, D.; Levy, P.E.; Preston, R. |
| Title |
Correcting errors from spatial upscaling of nonlinear greenhouse gas flux models |
Type |
Journal Article |
| Year |
2017 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Environmental Modelling & Software |
| Volume |
94 |
Issue |
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Pages |
157-165 |
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| ISSN |
1364-8152 |
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article |
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| Notes |
CropM, ft_macsur |
Approved |
no |
| Call Number |
MA @ admin @ |
Serial |
4945 |
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| Author |
Kipling, R.P.; Bannink, A.; Bellocchi, G.; Dalgaard, T.; Fox, N.J.; Hutchings, N.J.; Kjeldsen, C.; Lacetera, N.; Sinabell, F.; Topp, C.F.E.; van Oijen, M.; Virkajärvi, P.; Scollan, N.D. |
| Title |
Modelling European ruminant production systems: Facing the challenges of climate change |
Type |
Report |
| Year |
2017 |
Publication |
FACCE MACSUR Reports |
Abbreviated Journal |
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| Volume |
10 |
Issue |
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Pages |
L1.1-D1 |
| Keywords |
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| Abstract |
Ruminant production systems are important producers of food, support rural communities and culture, and help to maintain a range of ecosystem services including the sequestering of carbon in grassland soils. However, these systems also contribute significantly to climate change through greenhouse gas (GHG) emissions, while intensi- fication of production has driven biodiversity and nutrient loss, and soil degradation. Modeling can offer insights into the complexity underlying the relationships between climate change, management and policy choices, food production, and the maintenance of ecosystem services. This paper 1) provides an overview of how ruminant systems modeling supports the efforts of stakeholders and policymakers to predict, mitigate and adapt to climate change and 2) provides ideas for enhancing modeling to fulfil this role. Many grassland models can predict plant growth, yield and GHG emissions from mono-specific swards, but modeling multi-species swards, grassland quality and the impact of management changes requires further development. Current livestock models provide a good basis for predicting animal production; linking these with models of animal health and disease is a prior- ity. Farm-scale modeling provides tools for policymakers to predict the emissions of GHG and other pollutants from livestock farms, and to support the management decisions of farmers from environmental and economic standpoints. Other models focus on how policy and associated management changes affect a range of economic and environmental variables at regional, national and European scales. Models at larger scales generally utilise more empirical approaches than those applied at animal, field and farm-scales and include assumptions which may not be valid under climate change conditions. It is therefore important to continue to develop more realistic representations of processes in regional and global models, using the understanding gained from finer-scale modeling. An iterative process of model development, in which lessons learnt from mechanistic models are ap- plied to develop ‘smart’ empirical modeling, may overcome the trade-off between complexity and usability. De- veloping the modeling capacity to tackle the complex challenges related to climate change, is reliant on closer links between modelers and experimental researchers, and also requires knowledge-sharing and increasing technical compatibility across modeling disciplines. Stakeholder engagement throughout the process of model development and application is vital for the creation of relevant models, and important in reducing problems re- lated to the interpretation of modeling outcomes. Enabling modeling to meet the demands of policymakers and other stakeholders under climate change will require collaboration within adequately-resourced, long-term inter-disciplinary research networks |
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LiveM |
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no |
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MA @ admin @ |
Serial |
4947 |
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