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Author Rosenzweig, C.; Jones, J.W.; Hatfield, J.L.; Ruane, A.C.; Boote, K.J.; Thorburn, P.; Antle, J.M.; Nelson, G.C.; Porter, C.; Janssen, S.; Asseng, S.; Basso, B.; Ewert, F.; Wallach, D.; Baigorria, G.; Winter, J.M.
Title The Agricultural Model Intercomparison and Improvement Project (AgMIP): Protocols and pilot studies Type Journal Article
Year 2013 Publication (up) Agricultural and Forest Meteorology Abbreviated Journal Agricultural and Forest Meteorology
Volume 170 Issue Pages 166-182
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Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0168-1923 ISBN Medium
Area Expedition Conference
Notes CropM, ftnotmacsur, IPCC-AR5 Approved no
Call Number MA @ admin @ Serial 4927
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Author Wallach, D.; Thorburn, P.; Asseng, S.; Challinor, A.J.; Ewert, F.; Jones, J.W.; Rötter, R.; Ruane, A.
Title Estimating model prediction error: Should you treat predictions as fixed or random Type Journal Article
Year 2016 Publication (up) Environmental Modelling & Software Abbreviated Journal Env. Model. Softw.
Volume 84 Issue Pages 529-539
Keywords Crop model; Uncertainty; Prediction error; Parameter uncertainty; Input uncertainty; Model structure uncertainty
Abstract Crop models are important tools for impact assessment of climate change, as well as for exploring management options under current climate. It is essential to evaluate the uncertainty associated with predictions of these models. We compare two criteria of prediction error; MSEPfixed, which evaluates mean squared error of prediction for a model with fixed structure, parameters and inputs, and MSEPuncertain(X), which evaluates mean squared error averaged over the distributions of model structure, inputs and parameters. Comparison of model outputs with data can be used to estimate the former. The latter has a squared bias term, which can be estimated using hindcasts, and a model variance term, which can be estimated from a simulation experiment. The separate contributions to MSEPuncertain(X) can be estimated using a random effects ANOVA. It is argued that MSEPuncertain(X) is the more informative uncertainty criterion, because it is specific to each prediction situation.
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Language English Summary Language Original Title
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Series Volume Series Issue Edition
ISSN 1364-8152 ISBN Medium Article
Area Expedition Conference
Notes CropM, ft_macsur Approved no
Call Number MA @ admin @ Serial 4773
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Author Wallach, D.; Nissanka, S.P.; Karunaratne, A.S.; Weerakoon, W.M.W.; Thorburn, P.J.; Boote, K.J.; Jones, J.W.
Title Accounting for both parameter and model structure uncertainty in crop model predictions of phenology: A case study on rice Type Journal Article
Year 2016 Publication (up) European Journal of Agronomy Abbreviated Journal European Journal of Agronomy
Volume Issue Pages
Keywords Uncertainty; Phenology; Parameter uncertainty; Multi-model ensemble; Generalized least squares; Rice; Crop model; APSIM; DSSAT
Abstract We consider predictions of the impact of climate warming on rice development times in Sri Lanka. The major emphasis is on the uncertainty of the predictions, and in particular on the estimation of mean squared error of prediction. Three contributions to mean squared error are considered. The first is parameter uncertainty that results from model calibration. To take proper account of the complex data structure, generalized least squares is used to estimate the parameters and the variance-covariance matrix of the parameter estimators. The second contribution is model structure uncertainty, which we estimate using two different models. An ANOVA analysis is used to separate the contributions of parameter and model uncertainty to mean squared error. The third contribution is model error, which is estimated using hindcasts. Mean squared error of prediction of time from emergence to maturity, for baseline +2 °C, is estimated as 108 days2, with model error contributing 86 days2, followed by model structure uncertainty which contributes 15 days2 and parameter uncertainty which contributes 7 days2. We also show how prediction uncertainty is reduced if prediction concerns development time averaged over years, or the difference in development time between baseline and warmer temperatures.
Address 2016-09-13
Corporate Author Thesis
Publisher Place of Publication Editor
Language Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1161-0301 ISBN Medium Article
Area CropM Expedition Conference
Notes CropM; wos; ftnotmacsur; wsnotyet; Approved no
Call Number MA @ admin @ Serial 4777
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Author De Sanctis, G.; Roggero, P.P.; Seddaiu, G.; Orsini, R.; Porter, C.H.; Jones, J.W.
Title Long-term no tillage increased soil organic carbon content of rain-fed cereal systems in a Mediterranean area Type Journal Article
Year 2012 Publication (up) European Journal of Agronomy Abbreviated Journal European Journal of Agronomy
Volume 40 Issue Pages 18-27
Keywords N fertilization; C dynamics; DSSAT; Wheat; Maize; Weed fallow; sandy loam soil; cropping systems; agricultural systems; climate-change; winter-wheat; sequestration; matter; model; fertilization; dynamics
Abstract The differential impact on soil organic carbon (SOC) of applying no tillage (NT) compared to conventional tillage (CT, i.e. mouldboard ploughing), along with three rates of nitrogen (N) fertilizer application (0,90 and 180 kg ha(-1) y(-1)), was studied under rain-fed Mediterranean conditions in a long-term experiment based on a durum wheat-maize rotation, in which crop residues were left on the soil (NT) or incorporated (CT). Observed SOC content following 8 and 12 years of continuous treatment application was significantly higher in the top 10 cm of the soil under NT than CT, but it was similar in the 10-40 cm layer. NT grain yields for both maize and durum wheat were below those attained under CT (on average 32% and 14% lower respectively) at a given rate of N fertilizer application. Soil, climate and crop data over 5 years were used to calibrate DSSAT model in order to simulate the impact of the different management practices over a 50-year period. Good agreement was obtained between observed and simulated values for crops grain yield, above-ground biomass and observed SOC values. Results from the simulations showed that under NT the weeds growing during the intercrop fallow period made a significant contribution to the observed SOC increase. When the contribution of the weed fallow was considered, NT significantly increased SOC in the top 40 cm of the soil at an average rate of 0.43, 0.31 and 0.03 t ha(-1) per year, respectively for 180,90 and 0 kg N ha(-1) year(-1), within the simulated 50 years. Under CT, a significant SOC increase was simulated under N180 and a significant decrease when no fertilizer was supplied.
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Publisher Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1161-0301 ISBN Medium article
Area Expedition Conference
Notes CropM Approved no
Call Number MA @ admin @ Serial 4469
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Author Wallach, D.; Thorburn, P.; Asseng, S.; Challinor, A.J.; Ewert, F.; Jones, J.W.; Rötter, R.; Ruane, A.
Title Overview paper on comprehensive framework for assessment of error and uncertainty in crop model predictions Type Report
Year 2016 Publication (up) FACCE MACSUR Reports Abbreviated Journal
Volume 8 Issue Pages C4.1-D
Keywords MACSUR_ACK; CropM
Abstract Crop models are important tools for impact assessment of climate change, as well as for  exploring management options under current climate. It is essential to evaluate the  uncertainty associated with predictions of these models. Several ways of quantifying  prediction uncertainty have been explored in the literature, but there have been no  studies of how the different approaches are related to one another, and how they are  related to some overall measure of prediction uncertainty. Here we show that all the  different approaches can be related to two different viewpoints about the model; either  the model is treated as a fixed predictor with some average error, or the model can be  treated as a random variable with uncertainty in one or more of model structure, model  inputs and model parameters. We discuss the differences, and show how mean squared  error of prediction can be estimated in both cases. The results can be used to put  uncertainty estimates into a more general framework and to relate different uncertainty  estimates to one another and to overall prediction uncertainty. This should lead to a  better understanding of crop model prediction uncertainty and the underlying causes of  that uncertainty. This study was published as (Wallach et al. 2016)
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Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
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Area Expedition Conference
Notes Approved no
Call Number MA @ office @ Serial 2954
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