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Author Wallach, D.; Nissanka, S.P.; Karunaratne, A.S.; Weerakoon, W.M.W.; Thorburn, P.J.; Boote, K.J.; Jones, J.W.
Title Accounting for both parameter and model structure uncertainty in crop model predictions of phenology: A case study on rice Type Journal Article
Year 2016 Publication European Journal of Agronomy Abbreviated Journal European Journal of Agronomy
Volume Issue Pages
Keywords Uncertainty; Phenology; Parameter uncertainty; Multi-model ensemble; Generalized least squares; Rice; Crop model; APSIM; DSSAT
Abstract We consider predictions of the impact of climate warming on rice development times in Sri Lanka. The major emphasis is on the uncertainty of the predictions, and in particular on the estimation of mean squared error of prediction. Three contributions to mean squared error are considered. The first is parameter uncertainty that results from model calibration. To take proper account of the complex data structure, generalized least squares is used to estimate the parameters and the variance-covariance matrix of the parameter estimators. The second contribution is model structure uncertainty, which we estimate using two different models. An ANOVA analysis is used to separate the contributions of parameter and model uncertainty to mean squared error. The third contribution is model error, which is estimated using hindcasts. Mean squared error of prediction of time from emergence to maturity, for baseline +2 °C, is estimated as 108 days2, with model error contributing 86 days2, followed by model structure uncertainty which contributes 15 days2 and parameter uncertainty which contributes 7 days2. We also show how prediction uncertainty is reduced if prediction concerns development time averaged over years, or the difference in development time between baseline and warmer temperatures.
Address 2016-09-13
Corporate Author Thesis (up)
Publisher Place of Publication Editor
Language Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1161-0301 ISBN Medium Article
Area CropM Expedition Conference
Notes CropM; wos; ftnotmacsur; wsnotyet; Approved no
Call Number MA @ admin @ Serial 4777
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Author Boote, K.J.; Porter, C.; Jones, J.W.; Thorburn, P.J.; Kersebaum, K.C.; Hoogenboom, G.; White, J.W.; Hatfield, J.L.
Title Sentinel site data for crop model improvement – definition and characterization Type Conference Article
Year 2015 Publication Abbreviated Journal
Volume Advances in Agricultural Systems Modeling (7) Issue Pages
Keywords CropM;
Abstract
Address
Corporate Author Thesis (up)
Publisher ASA, CSSA, and SSSA Place of Publication Madison, WI Editor Hatfield, J.L.; Fleisher, D.
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes Approved no
Call Number MA @ admin @ Serial 2338
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Author Wallach, D.; Thorburn, P.; Asseng, S.; Challinor, A.J.; Ewert, F.; Jones, J.W.; Rötter, R.; Ruane, A.
Title Overview paper on comprehensive framework for assessment of error and uncertainty in crop model predictions Type Report
Year 2016 Publication FACCE MACSUR Reports Abbreviated Journal
Volume 8 Issue Pages C4.1-D
Keywords MACSUR_ACK; CropM
Abstract Crop models are important tools for impact assessment of climate change, as well as for  exploring management options under current climate. It is essential to evaluate the  uncertainty associated with predictions of these models. Several ways of quantifying  prediction uncertainty have been explored in the literature, but there have been no  studies of how the different approaches are related to one another, and how they are  related to some overall measure of prediction uncertainty. Here we show that all the  different approaches can be related to two different viewpoints about the model; either  the model is treated as a fixed predictor with some average error, or the model can be  treated as a random variable with uncertainty in one or more of model structure, model  inputs and model parameters. We discuss the differences, and show how mean squared  error of prediction can be estimated in both cases. The results can be used to put  uncertainty estimates into a more general framework and to relate different uncertainty  estimates to one another and to overall prediction uncertainty. This should lead to a  better understanding of crop model prediction uncertainty and the underlying causes of  that uncertainty. This study was published as (Wallach et al. 2016)
Address
Corporate Author Thesis (up)
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes Approved no
Call Number MA @ office @ Serial 2954
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Author Makowski, D.; Asseng, S.; Ewert, F.; Bassu, S.; Durand, J.L.; Li, T.; Martre, P.; Adam, M.; Aggarwal, P.K.; Angulo, C.; Baron, C.; Basso, B.; Bertuzzi, P.; Biernath, C.; Boogaard, H.; Boote, K.J.; Bouman, B.; Bregaglio, S.; Brisson, N.; Buis, S.; Cammarano, D.; Challinor, A.J.; Confalonieri, R.; Conijn, J.G.; Corbeels, M.; Deryng, D.; De Sanctis, G.; Doltra, J.; Fumoto, T.; Gaydon, D.; Gayler, S.; Goldberg, R.; Grant, R.F.; Grassini, P.; Hatfield, J.L.; Hasegawa, T.; Heng, L.; Hoek, S.; Hooker, J.; Hunt, L.A.; Ingwersen, J.; Izaurralde, R.C.; Jongschaap, R.E.E.; Jones, J.W.; Kemanian, R.A.; Kersebaum, K.C.; Kim, S.-H.; Lizaso, J.; Marcaida, M.; Müller, C.; Nakagawa, H.; Naresh Kumar, S.; Nendel, C.; O’Leary, G.J.; Olesen, J.E.; Oriol, P.; Osborne, T.M.; Palosuo, T.; Pravia, M.V.; Priesack, E.; Ripoche, D.; Rosenzweig, C.; Ruane, A.C.; Ruget, F.; Sau, F.; Semenov, M.A.; Shcherbak, I.; Singh, B.; Singh, U.; Soo, H.K.; Steduto, P.; Stöckle, C.; Stratonovitch, P.; Streck, T.; Supit, I.; Tang, L.; Tao, F.; Teixeira, E.I.; Thorburn, P.; Timlin, D.; Travasso, M.; Rötter, R.P.; Waha, K.; Wallach, D.; White, J.W.; Wilkens, P.; Williams, J.R.; Wolf, J.; Yin, X.; Yoshida, H.; Zhang, Z.; Zhu, Y.
Title A statistical analysis of three ensembles of crop model responses to temperature and CO2 concentration Type Journal Article
Year 2015 Publication Agricultural and Forest Meteorology Abbreviated Journal Agricultural and Forest Meteorology
Volume 214-215 Issue Pages 483-493
Keywords climate change; crop model; emulator; meta-model; statistical model; yield; climate-change; wheat yields; metaanalysis; uncertainty; simulation; impacts
Abstract Ensembles of process-based crop models are increasingly used to simulate crop growth for scenarios of temperature and/or precipitation changes corresponding to different projections of atmospheric CO2 concentrations. This approach generates large datasets with thousands of simulated crop yield data. Such datasets potentially provide new information but it is difficult to summarize them in a useful way due to their structural complexities. An associated issue is that it is not straightforward to compare crops and to interpolate the results to alternative climate scenarios not initially included in the simulation protocols. Here we demonstrate that statistical models based on random-coefficient regressions are able to emulate ensembles of process-based crop models. An important advantage of the proposed statistical models is that they can interpolate between temperature levels and between CO2 concentration levels, and can thus be used to calculate temperature and [CO2] thresholds leading to yield loss or yield gain, without rerunning the original complex crop models. Our approach is illustrated with three yield datasets simulated by 19 maize models, 26 wheat models, and 13 rice models. Several statistical models are fitted to these datasets, and are then used to analyze the variability of the yield response to [CO2] and temperature. Based on our results, we show that, for wheat, a [CO2] increase is likely to outweigh the negative effect of a temperature increase of +2 degrees C in the considered sites. Compared to wheat, required levels of [CO2] increase are much higher for maize, and intermediate for rice. For all crops, uncertainties in simulating climate change impacts increase more with temperature than with elevated [CO2].
Address
Corporate Author Thesis (up)
Publisher Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0168-1923 ISBN Medium Article
Area Expedition Conference
Notes CropM, ft_macsur Approved no
Call Number MA @ admin @ Serial 4714
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Author Martre, P.; Wallach, D.; Asseng, S.; Ewert, F.; Jones, J.W.; Rötter, R.P.; Boote, K.J.; Ruane, A.C.; Thorburn, P.J.; Cammarano, D.; Hatfield, J.L.; Rosenzweig, C.; Aggarwal, P.K.; Angulo, C.; Basso, B.; Bertuzzi, P.; Biernath, C.; Brisson, N.; Challinor, A.J.; Doltra, J.; Gayler, S.; Goldberg, R.; Grant, R.F.; Heng, L.; Hooker, J.; Hunt, L.A.; Ingwersen, J.; Izaurralde, R.C.; Kersebaum, K.C.; Müller, C.; Kumar, S.N.; Nendel, C.; O’Leary, G.; Olesen, J.E.; Osborne, T.M.; Palosuo, T.; Priesack, E.; Ripoche, D.; Semenov, M.A.; Shcherbak, I.; Steduto, P.; Stöckle, C.O.; Stratonovitch, P.; Streck, T.; Supit, I.; Tao, F.; Travasso, M.; Waha, K.; White, J.W.; Wolf, J.
Title Multimodel ensembles of wheat growth: many models are better than one Type Journal Article
Year 2015 Publication Global Change Biology Abbreviated Journal Glob. Chang. Biol.
Volume 21 Issue 2 Pages 911-925
Keywords Climate; Climate Change; Environment; *Models, Biological; Seasons; Triticum/*growth & development; ecophysiological model; ensemble modeling; model intercomparison; process-based model; uncertainty; wheat (Triticum aestivum L.)
Abstract Crop models of crop growth are increasingly used to quantify the impact of global changes due to climate or crop management. Therefore, accuracy of simulation results is a major concern. Studies with ensembles of crop models can give valuable information about model accuracy and uncertainty, but such studies are difficult to organize and have only recently begun. We report on the largest ensemble study to date, of 27 wheat models tested in four contrasting locations for their accuracy in simulating multiple crop growth and yield variables. The relative error averaged over models was 24-38% for the different end-of-season variables including grain yield (GY) and grain protein concentration (GPC). There was little relation between error of a model for GY or GPC and error for in-season variables. Thus, most models did not arrive at accurate simulations of GY and GPC by accurately simulating preceding growth dynamics. Ensemble simulations, taking either the mean (e-mean) or median (e-median) of simulated values, gave better estimates than any individual model when all variables were considered. Compared to individual models, e-median ranked first in simulating measured GY and third in GPC. The error of e-mean and e-median declined with an increasing number of ensemble members, with little decrease beyond 10 models. We conclude that multimodel ensembles can be used to create new estimators with improved accuracy and consistency in simulating growth dynamics. We argue that these results are applicable to other crop species, and hypothesize that they apply more generally to ecological system models.
Address
Corporate Author Thesis (up)
Publisher Place of Publication Editor
Language English Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1354-1013 ISBN Medium Article
Area Expedition Conference
Notes CropM, ftnotmacsur Approved no
Call Number MA @ admin @ Serial 4665
Permanent link to this record