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Yin, X.; Kersebaum, K.-C.; Beaudoin, N.; Constantin, J.; Chen, F.; Louarn, G.; Manevski, K.; Hoffmann, M.; Kollas, C.; Armas-Herrera, C.M.; Baby, S.; Bindi, M.; Dibari, C.; Ferchaud, F.; Ferrise, R.; de Cortazar-Atauri, I.G.; Launay, M.; Mary, B.; Moriondo, M.; Öztürk, I.; Ruget, F.; Sharif, B.; Wachter-Ripoche, D.; Olesen, J.E. |
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Title |
Uncertainties in simulating N uptake, net N mineralization, soil mineral N and N leaching in European crop rotations using process-based models |
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Journal Article |
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Year |
2020 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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107863 |
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Keywords |
multi-model ensemble; crop rotations; catch crops; N cycling; N export |
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Abstract |
Modelling N transformations within cropping systems is crucial for N management optimization in order to increase N use efficiency and reduce N losses. Such modelling remains challenging because of the complexity of N cycling in soil–plant systems. In the current study, the uncertainties of six widely used process-based models (PBMs), including APSIM, CROPSYST, DAISY, FASSET, HERMES and STICS, were tested in simulating different N managements (catch crops (CC) and different N fertilizer rates) in 12-year rotations in Western Europe. Winter wheat, sugar beet and pea were the main crops, and radish was the main CC in the tested systems. Our results showed that PBMs simulated yield, aboveground biomass, N export and N uptake well with low RMSE values, except for sugar beet, which was generally less well parameterized. Moreover, PBMs provided more accurate crop simulations (i.e. N export and N uptake) compared to simulations of soil (N mineralization and soil mineral N (SMN)) and environmental variables (N leaching). The use of multi-model ensemble mean or median of four PBMs significantly reduced the mean absolute percentage error (MAPE) between simulations and observations to less than 15% for yield, aboveground biomass, N export and N uptake. Multi-model ensemble also significantly reduced the MAPE for net N mineralization and annual N leaching to around 15%, while it was larger than 20% for SMN. Generally, PBMs well simulated the CC effects on N fluxes, i.e. increasing N mineralization and reducing N leaching in both short-term and long-term, and all PBMs correctly predicted the effects of the reduced N rate on all measured variables in the study. The uncertainties of multi-model ensemble for N mineralization, SMN and N leaching were larger, mainly because these variables are influenced by plant-soil interactions and subject to cumulative long-term effects in crop rotations, which makes them more difficult to simulate. Large differences existed between individual PBMs due to the differences in formalisms for describing N processes in soil–plant systems, the skills of modelers and the model calibration level. In addition, the model performance also depended on the simulated variables, for instance, HERMES and FASSET performed better for yield and crop biomass, APSIM, DAISY and STICS performed better for N export and N uptake, STICS provided best simulation for SMN and N leaching among the six individual PBMs in the study, but all PBMs met difficulties to well predict either average or variance of soil N mineralization. Our results showed that better calibration for soil N variables is needed to improve model predictions of N cycling in order to optimize N management in crop rotations. |
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0378-4290 |
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article |
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CropM |
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CropM, ft_macsur |
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MA @ admin @ |
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5235 |
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Author |
Savary, S.; Jouanin, C.; Félix, I.; Gourdain, E.; Piraux, F.; Brun, F.; Willocquet, L. |
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Title |
Assessing plant health in a network of experiments on hardy winter wheat varieties in France: patterns of disease-climate associations |
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Journal Article |
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Year |
2016 |
Publication |
European Journal of Plant Pathology |
Abbreviated Journal |
Eur. J. Plant Pathol. |
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146 |
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741-755 |
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Keywords |
Puccinia triticina; Puccinia striiformis; Fusarium graminearum; Fusarium culmorum; Fusarium avenaceum; Blumeria graminis; Zymoseptoria tritici; Categorical data; Risk factor; Multiple pathosystem; Correspondence analysis; Logistic regression |
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A data set generated by a multi-year (2003–2010) and multi-site network of experiments on winter wheat varieties grown at different levels of crop management is analysed in order to assess the importance of climate on the variability of wheat health. Wheat health is represented by the multiple pathosystem involving five components: leaf rust, yellow rust, fusarium head blight, powdery mildew, and septoria tritici blotch. An overall framework of associations between multiple diseases and climate variables is developed. This framework involves disease levels in a binary form (i.e. epidemic vs. non-epidemic) and synthesis variables accounting for climate over spring and early summer. The multiple disease-climate pattern of associations of this framework conforms to disease-specific knowledge of climate effects on the components of the pathosystem. It also concurs with a (climate-based) risk factor approach to wheat diseases. This report emphasizes the value of large scale data in crop health assessment and the usefulness of a risk factor approach for both tactical and strategic decisions for crop health management. |
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0929-1873 1573-8469 |
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CropM |
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CropMwp;wos; ftnot_macsur; |
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MA @ admin @ |
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4755 |
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Challinor, A.J.; Müller, C.; Asseng, S.; Deva, C.; Nicklin, K.J.; Wallach, D.; Vanuytrecht, E.; Whitfield, S.; Ramirez-Villegas, J.; Koehler, A.-K. |
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Title |
Improving the use of crop models for risk assessment and climate change adaptation |
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Journal Article |
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Year |
2017 |
Publication |
Agricultural Systems |
Abbreviated Journal |
Agric. Syst. |
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159 |
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296-306 |
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Keywords |
Crop model; Risk assessment; Climate change impacts; Adaptation; Climate models; Uncertainty |
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Highlights
• 14 criteria for use of crop models in assessments of impacts, adaptation and risk • Working with stakeholders to identify timing of risks is key to risk assessments. • Multiple methods needed to critically assess the use of climate model output • Increasing transparency and inter-comparability needed in risk assessments
Abstract
Crop models are used for an increasingly broad range of applications, with a commensurate proliferation of methods. Careful framing of research questions and development of targeted and appropriate methods are therefore increasingly important. In conjunction with the other authors in this special issue, we have developed a set of criteria for use of crop models in assessments of impacts, adaptation and risk. Our analysis drew on the other papers in this special issue, and on our experience in the UK Climate Change Risk Assessment 2017 and the MACSUR, AgMIP and ISIMIP projects. The criteria were used to assess how improvements could be made to the framing of climate change risks, and to outline the good practice and new developments that are needed to improve risk assessment. Key areas of good practice include: i. the development, running and documentation of crop models, with attention given to issues of spatial scale and complexity; ii. the methods used to form crop-climate ensembles, which can be based on model skill and/or spread; iii. the methods used to assess adaptation, which need broadening to account for technological development and to reflect the full range options available. The analysis highlights the limitations of focussing only on projections of future impacts and adaptation options using pre-determined time slices. Whilst this long-standing approach may remain an essential component of risk assessments, we identify three further key components: 1. Working with stakeholders to identify the timing of risks. What are the key vulnerabilities of food systems and what does crop-climate modelling tell us about when those systems are at risk? 2. Use of multiple methods that critically assess the use of climate model output and avoid any presumption that analyses should begin and end with gridded output. 3. Increasing transparency and inter-comparability in risk assessments. Whilst studies frequently produce ranges that quantify uncertainty, the assumptions underlying these ranges are not always clear. We suggest that the contingency of results upon assumptions is made explicit via a common uncertainty reporting format; and/or that studies are assessed against a set of criteria, such as those presented in this paper. |
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phase 2+ |
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0308521x |
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CropM, ft_macsur |
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MA @ admin @ |
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5175 |
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Maiorano, A.; Martre, P.; Asseng, S.; Ewert, F.; Müller, C.; Rötter, R.P.; Ruane, A.C.; Semenov, M.A.; Wallach, D.; Wang, E.; Alderman, P.D.; Kassie, B.T.; Biernath, C.; Basso, B.; Cammarano, D.; Challinor, A.J.; Doltra, J.; Dumont, B.; Rezaei, E.E.; Gayler, S.; Kersebaum, K.C.; Kimball, B.A.; Koehler, A.-K.; Liu, B.; O’Leary, G.J.; Olesen, J.E.; Ottman, M.J.; Priesack, E.; Reynolds, M.; Stratonovitch, P.; Streck, T.; Thorburn, P.J.; Waha, K.; Wall, G.W.; White, J.W.; Zhao, Z.; Zhu, Y. |
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Title |
Crop model improvement reduces the uncertainty of the response to temperature of multi-model ensembles |
Type |
Journal Article |
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Year |
2016 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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Volume |
202 |
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Pages |
5-20 |
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Keywords |
Impact uncertainty; High temperature; Model improvement; Multi-model ensemble; Wheat crop model |
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To improve climate change impact estimates and to quantify their uncertainty, multi-model ensembles (MMEs) have been suggested. Model improvements can improve the accuracy of simulations and reduce the uncertainty of climate change impact assessments. Furthermore, they can reduce the number of models needed in a MME. Herein, 15 wheat growth models of a larger MME were improved through re-parameterization and/or incorporating or modifying heat stress effects on phenology, leaf growth and senescence, biomass growth, and grain number and size using detailed field experimental data from the USDA Hot Serial Cereal experiment (calibration data set). Simulation results from before and after model improvement were then evaluated with independent field experiments from a CIMMYT world-wide field trial network (evaluation data set). Model improvements decreased the variation (10th to 90th model ensemble percentile range) of grain yields simulated by the MME on average by 39% in the calibration data set and by 26% in the independent evaluation data set for crops grown in mean seasonal temperatures >24 °C. MME mean squared error in simulating grain yield decreased by 37%. A reduction in MME uncertainty range by 27% increased MME prediction skills by 47%. Results suggest that the mean level of variation observed in field experiments and used as a benchmark can be reached with half the number of models in the MME. Improving crop models is therefore important to increase the certainty of model-based impact assessments and allow more practical, i.e. smaller MMEs to be used effectively. |
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2016-09-13 |
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Newsletter July 2016 |
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0378-4290 |
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CropMwp;wos; ft=macsur; wsnot_yet; |
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MA @ admin @ |
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4776 |
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Wallach, D.; Mearns, L.O.; Ruane, A.C.; Rötter, R.P.; Asseng, S. |
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Lessons from climate modeling on the design and use of ensembles for crop modeling |
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Journal Article |
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2016 |
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Climatic Change |
Abbreviated Journal |
Clim. Change |
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Model ensembles; Crop models; Climate models; Model weighting; Super ensembles |
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Working with ensembles of crop models is a recent but important development in crop modeling which promises to lead to better uncertainty estimates for model projections and predictions, better predictions using the ensemble mean or median, and closer collaboration within the modeling community. There are numerous open questions about the best way to create and analyze such ensembles. Much can be learned from the field of climate modeling, given its much longer experience with ensembles. We draw on that experience to identify questions and make propositions that should help make ensemble modeling with crop models more rigorous and informative. The propositions include defining criteria for acceptance of models in a crop MME, exploring criteria for evaluating the degree of relatedness of models in a MME, studying the effect of number of models in the ensemble, development of a statistical model of model sampling, creation of a repository for MME results, studies of possible differential weighting of models in an ensemble, creation of single model ensembles based on sampling from the uncertainty distribution of parameter values or inputs specifically oriented toward uncertainty estimation, the creation of super ensembles that sample more than one source of uncertainty, the analysis of super ensemble results to obtain information on total uncertainty and the separate contributions of different sources of uncertainty and finally further investigation of the use of the multi-model mean or median as a predictor. |
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0165-0009 1573-1480 |
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Review |
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CropM |
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CropM; wos; ft=macsur; wsnotyet; |
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MA @ admin @ |
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4781 |
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