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Author |
Schauberger, B.; Rolinski, S.; Müller, C. |
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Title |
A network-based approach for semi-quantitative knowledge mining and its application to yield variability |
Type |
Journal Article |
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Year  |
2016 |
Publication |
Environmental Research Letters |
Abbreviated Journal |
Environ. Res. Lett. |
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Volume |
11 |
Issue |
12 |
Pages |
123001 |
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Keywords |
yield variability; crop models; interaction network; plant process; wheat; maize; rice; Global Food Security; Climate-Change; Crop Production; Stress Tolerance; Wheat Yields; Heat-Stress; Temperature Variability; Environmental-Factors; United-States; Elevated CO2 |
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Abstract |
Variability of crop yields is detrimental for food security. Under climate change its amplitude is likely to increase, thus it is essential to understand the underlying causes and mechanisms. Crop models are the primary tool to project future changes in crop yields under climate change. Asystematic overview of drivers and mechanisms of crop yield variability (YV) can thus inform crop model development and facilitate improved understanding of climate change impacts on crop yields. Yet there is a vast body of literature on crop physiology and YV, which makes a prioritization of mechanisms for implementation in models challenging. Therefore this paper takes on a novel approach to systematically mine and organize existing knowledge from the literature. The aim is to identify important mechanisms lacking in models, which can help to set priorities in model improvement. We structure knowledge from the literature in a semi-quantitative network. This network consists of complex interactions between growing conditions, plant physiology and crop yield. We utilize the resulting network structure to assign relative importance to causes of YV and related plant physiological processes. As expected, our findings confirm existing knowledge, in particular on the dominant role of temperature and precipitation, but also highlight other important drivers of YV. More importantly, our method allows for identifying the relevant physiological processes that transmit variability in growing conditions to variability in yield. We can identify explicit targets for the improvement of crop models. The network can additionally guide model development by outlining complex interactions between processes and by easily retrieving quantitative information for each of the 350 interactions. We show the validity of our network method as a structured, consistent and scalable dictionary of literature. The method can easily be applied to many other research fields. |
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2017-04-07 |
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English |
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ISSN |
1748-9326 |
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Review |
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Notes |
CropM, ft_macsur |
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no |
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Call Number |
MA @ admin @ |
Serial |
4942 |
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Author |
Comadira, G.; Rasool, B.; Karpinska, B.; Morris, J.; Verrall, S.R.; Hedley, P.E.; Foyer, C.H.; Hancock, R.D. |
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Title |
Nitrogen deficiency in barley (Hordeum vulgare) seedlings induces molecular and metabolic adjustments that trigger aphid resistance |
Type |
Journal Article |
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Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
66 |
Issue |
12 |
Pages |
3639-3655 |
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Keywords |
Animals; Aphids/drug effects/*physiology; Biomass; Carbon/pharmacology; Chlorophyll/metabolism; Cluster Analysis; *Disease Resistance/drug effects; Gases/metabolism; Gene Expression Regulation, Plant/drug effects; Hordeum/drug effects/genetics/*parasitology; Nitrogen/*deficiency/metabolism/pharmacology; Oxidation-Reduction/drug effects; Photosynthesis/drug effects; Plant Diseases/genetics/*parasitology; Plant Leaves/drug effects/genetics/metabolism; Plant Proteins/genetics/metabolism; Plant Shoots/drug effects/metabolism; RNA, Messenger/genetics/metabolism; Secondary Metabolism/drug effects; Seedlings/drug effects/*metabolism/*parasitology; Signal Transduction/drug effects; Thylakoids/drug effects/metabolism/parasitology; Transcription Factors/metabolism; Transcriptome/genetics; Cross-tolerance; Myzus persicae; kinase cascades; metabolite profiles; nitrogen limitation; oxidative stress; sugar signalling |
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Abstract |
Agricultural nitrous oxide (N2O) pollution resulting from the use of synthetic fertilizers represents a significant contribution to anthropogenic greenhouse gas emissions, providing a rationale for reduced use of nitrogen (N) fertilizers. Nitrogen limitation results in extensive systems rebalancing that remodels metabolism and defence processes. To analyse the regulation underpinning these responses, barley (Horedeum vulgare) seedlings were grown for 7 d under N-deficient conditions until net photosynthesis was 50% lower than in N-replete controls. Although shoot growth was decreased there was no evidence for the induction of oxidative stress despite lower total concentrations of N-containing antioxidants. Nitrogen-deficient barley leaves were rich in amino acids, sugars and tricarboxylic acid cycle intermediates. In contrast to N-replete leaves one-day-old nymphs of the green peach aphid (Myzus persicae) failed to reach adulthood when transferred to N-deficient barley leaves. Transcripts encoding cell, sugar and nutrient signalling, protein degradation and secondary metabolism were over-represented in N-deficient leaves while those associated with hormone metabolism were similar under both nutrient regimes with the exception of mRNAs encoding proteins involved in auxin metabolism and responses. Significant similarities were observed between the N-limited barley leaf transcriptome and that of aphid-infested Arabidopsis leaves. These findings not only highlight significant similarities between biotic and abiotic stress signalling cascades but also identify potential targets for increasing aphid resistance with implications for the development of sustainable agriculture. |
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2016-10-31 |
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0022-0957 1460-2431 |
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CropM |
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no |
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Call Number |
MA @ admin @ |
Serial |
4787 |
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Author |
Wolf, J.; Ouattara, K.; Supit, I. |
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Title |
Sowing rules for estimating rainfed yield potential of sorghum and maize in Burkina Faso |
Type |
Journal Article |
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Year |
2015 |
Publication |
Agricultural and Forest Meteorology |
Abbreviated Journal |
Agricultural and Forest Meteorology |
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Volume |
214-215 |
Issue |
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Pages |
208-218 |
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Keywords |
crop modelling; maize; sorghum; sowing; WOFOST; yield potential; semiarid west-africa; pearl-millet cultivation; soil organic-matter; climate-change; planting dates; crop model; variability; water; adaptation; tillage |
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Abstract |
To reduce the dependence on local expert knowledge, which is important for large-scale crop modelling studies, we analyzed sowing dates and rules for maize (Zea mays L.) and sorghum (Sorghum bicolor (L)) at three locations in Burkina Faso with strongly decreasing rainfall amounts from south to north. We tested in total 22 methods to derive optimal sowing dates that result in highest water-limited yields and lowest yield variation in a reproducible and objective way. The WOFOST crop growth simulation model was used. We found that sowing dates that are based on local expert knowledge, may work quite well for Burkina Faso and for West Africa in general. However, when no a priori information is available, maize should be sown between Julian days 160 and 200, with application of the following criteria: (a) cumulative rainfall in the sowing window is >= 3 cm or available soil moisture content is >2 cm in the moderately dry central part of Burkina Faso, (b) cumulative rainfall in this period is >= 2 cm or available soil moisture content is >1 cm in the more humid regions in the southern part of Burkina Faso. Sorghum should also be sown between Julian days 160 and 200 with application of the following criteria: (a) in the dry northern part of Burkina Faso the long duration sorghum variety should be sown when cumulative rainfall is >2 cm in the sowing window, and the short duration sorghum variety should be sown later when cumulative rainfall is >= 3 cm, (b) in central Burkina Faso sowing should start when cumulative rainfall in this period is >= 2 cm or when available soil moisture content is >1 cm. Sowing date rules are shown to be generally crop and location specific and are not generic for West Africa. However, the required precision of the sowing rules appears to rapidly decrease with increasing duration and intensity of the rainy season. Sowing delay as a result of, for example, labour constraints, has a disastrous effect on rainfed maize and sorghum yields, particularly in the northern part of West Africa with low rainfall. Optimization of sowing dates can also be done by simulating crop yields in a time window of two months around a predefined sowing date. Using these optimized dates appears to result in a good estimate of the maximal mean rainfed yield level. (C) 2015 Elsevier B.V. All rights reserved. |
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2015-10-12 |
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ISSN |
0168-1923 |
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Article |
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Notes |
CropM |
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no |
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Call Number |
MA @ admin @ |
Serial |
4702 |
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Author |
Palosuo, T.; Rotter, R.P.; Salo, T.; Peltonen-Sainio, P.; Tao, F.; Lehtonen, H. |
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Title |
Effects of climate and historical adaptation measures on barley yield trends in Finland |
Type |
Journal Article |
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Year |
2015 |
Publication |
Climate Research |
Abbreviated Journal |
Clim. Res. |
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Volume |
65 |
Issue |
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Pages |
221-236 |
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Keywords |
adaptation; climate; crop simulation modelling; plant breeding; spring barley; yield gap; crop production; spring barley; quantitative-evaluation; european conditions; cereal cultivars; growing-season; use efficiency; field crops; wheat; northern |
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Abstract |
In this study, the WOFOST crop simulation model was used together with comprehensive empirical databases on barley Hordeum vulgare L. to study the contributions of different yield-determining and -limiting factors to observed trends of barley yield in Finland from 1988 to 2008. Simulations were performed at 3 study sites representing different agro-ecological zones, and compared with the data from experimental sites and that reported by local farmers. Yield gaps between simulated potential yields and farmers’ yields and their trends were assessed. Positive observed yield trends of Finnish barley mostly resulted from the development and usage of new, high-yielding cultivars. Simulated trends in climatic potential and water-limited potential yields of individual cultivars showed a slight declining trend. Yield gaps showed an increasing trend in 2 out of 3 study areas. Since the mid-1990s, a major reason for this has been the lack of market and policy incentives favouring crop management decisions, i.e. annual fertilisation, soil maintenance, drainage and crop rotation decisions, aiming for higher yields. The study indicates potential options for increasing or maintaining barley yields in the future. The breeding of new climate-resilient cultivars is the primary option. However, this needs to work alongside overall adjustments to farm management and must be supported by financial incentives for farmers to increase yields. |
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English |
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ISSN |
0936-577x |
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CropM, ft_macsur |
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no |
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Call Number |
MA @ admin @ |
Serial |
4700 |
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Author |
Waterworth, W.M.; Bray, C.M.; West, C.E. |
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Title |
The importance of safeguarding genome integrity in germination and seed longevity |
Type |
Journal Article |
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Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
66 |
Issue |
12 |
Pages |
3549-3558 |
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Keywords |
DNA Damage/genetics; DNA Repair/genetics; *Genome, Plant; Germination/*genetics; Plant Physiological Phenomena/*genetics; Seeds/*genetics; Ageing; DNA repair; double-strand break; germination; longevity; recombination; seed vigour; viability |
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Abstract |
Seeds are important to agriculture and conservation of plant biodiversity. In agriculture, seed germination performance is an important determinant of crop yield, in particular under adverse climatic conditions. Deterioration in seed quality is associated with the accumulation of cellular damage to macromolecules including lipids, protein, and DNA. Mechanisms that mitigate the deleterious cellular damage incurred in the quiescent state and in cycles of desiccation-hydration are crucial for the maintenance of seed viability and germination vigour. In early-imbibing seeds, damage to the embryo genome must be repaired prior to initiation of cell division to minimize growth inhibition and mutation of genetic information. Here we review recent advances that have established molecular links between genome integrity and seed quality. These studies identified that maintenance of genome integrity is particularly important to the seed stage of the plant lifecycle, revealing new insight into the physiological roles of plant DNA repair and recombination mechanisms. The high conservation of DNA repair and recombination factors across plant species underlines their potential as promising targets for the improvement of crop performance and development of molecular markers for prediction of seed vigour. |
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ISSN |
0022-0957 1460-2431 |
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Review |
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CropM |
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Call Number |
MA @ admin @ |
Serial |
4579 |
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