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Brylińska, M.; Sobkowiak, S.; Stefańczyk, E.; Śliwka, J. |
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Title |
Potato cultivation system affects population structure of Phytophthora infestans |
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2016 |
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Fungal Ecology |
Abbreviated Journal |
Fungal Ecology |
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20 |
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132-143 |
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SSR; Population genetic structure; Late blight; Potato; late blight resistance; mating-type; microsatellite markers; phenotypic diversity; sexual reproduction; genotypic diversity; nordic countries; severe outbreaks; sarpo mira; pathogenicity |
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Phytophthora infestans is one of the most destructive potato pathogens. Many factors influence the population structure of P. infestans, including migration, climate and type of potato cultivation. Here, we analyse 365 P. infestans isolates collected from three regions of Poland over three years. We determined mating type, mitochondrial haplotype, resistance to metalaxyl, virulence and polymorphism at 14 simple sequence repeat (SSR) loci. Analysis of SSR markers showed high genetic diversity associated with this population. Model-based structure analysis grouped 299 unique genotypes into four main clusters. The P. infestans isolates collected from the Mlochow region, which has the most intensive level of potato cultivation, formed a distinct cluster, indicating a strong effect of the cultivation system on pathogen population structure. Three clusters contained isolates with frequent presence of three alleles at one locus, which may affect their capacity for sexual reproduction and preserve groups of fit genotypes that propagate asexually. (C) 2016 Elsevier Ltd and The British Mycological Society. |
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1754-5048 |
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CropM, ft_macsur |
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MA @ admin @ |
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4720 |
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Author |
Kipling, R.; Scollan, N.; Bannink, A.; van Middelkoop, J. |
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Title |
From diversity to strategy: Livestock research for effective policy in a climate change world |
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Report |
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2016 |
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FACCE MACSUR Reports |
Abbreviated Journal |
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8 |
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H0.3-D1 |
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policy brief, networking |
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European livestock agriculture is extraordinarily diverse, and so are the challenges it faces. This diversity has contributed to the development of a fragmented set of research communities. As a result, livestock research is often under-represented at policy level, despite its high relevance for the environment and food security. Understanding livestock systems and how they can sustainably adapt to global change requires inputs across research areas, including grasslands, nutrition, health, welfare and ecology. It also requires experimental researchers, modellers and stakeholders to work closely together. Networks and capacity building structures are vital to enable livestock research to meet the challenges of climate change. They need to maintain shared resources and provide non-competitive arenas to share and synthesize results for policy support. ï‚· Long term strategic investment is needed to support such structures. Their leadership requires very different skills to those effective in scientific project coordination. |
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MA @ admin @ |
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2269 |
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Semenov, M.A.; Stratonovitch, P. |
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Local-scale CMIP5-based climate scenarios for MACSUR2 |
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2016 |
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FACCE MACSUR Reports |
Abbreviated Journal |
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8 |
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C2.2-D |
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CropM |
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Climate sensitivity of GCMs was used to select 5 GCMs from the CMIP5 ensemble for impact studies in MACSUR2. Selected GCMs for MACSUR2 are EC-EARTH (7), GFDL-CM3 (8) HadGEM2-ES (10), MIROC5 (13), and MPI-ESM-MR (15). These GCMs are evenly distributed among CMIP5 (Fig 1) and should capture, in principal, climate uncertainty of the CMIP5 ensemble. Using 5 GCMs will enable us to assess uncertainties in impacts related to uncertainty in climate projections. The selection of GCMs in MACSUR2 has a good overlap with selections of GCMs used in CORDEX and AgMIP projects. We used the LARS-WG generator to construct local-scale CMIP5-based climate scenarios for Europe (Semenov & Stratonovitch, 2015). Fifteen sites were selected in Europe for MACSUR2. For each site and each selected GCM, 100 yrs climate daily data were generated by LARS-WG for RCP4.5 and RCP8.5 emission scenarios and for baseline and 3 future periods: near-term (2021-2040), mid-term (2041-2060) and long-term (2081-2100). |
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MA @ admin @ |
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2270 |
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Wallach, D.; Thorburn, P.; Asseng, S.; Challinor, A.J.; Ewert, F.; Jones, J.W.; Rötter, R.; Ruane, A. |
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Overview paper on comprehensive framework for assessment of error and uncertainty in crop model predictions |
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Report |
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2016 |
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FACCE MACSUR Reports |
Abbreviated Journal |
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8 |
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C4.1-D |
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MACSUR_ACK; CropM |
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Crop models are important tools for impact assessment of climate change, as well as for exploring management options under current climate. It is essential to evaluate the uncertainty associated with predictions of these models. Several ways of quantifying prediction uncertainty have been explored in the literature, but there have been no studies of how the different approaches are related to one another, and how they are related to some overall measure of prediction uncertainty. Here we show that all the different approaches can be related to two different viewpoints about the model; either the model is treated as a fixed predictor with some average error, or the model can be treated as a random variable with uncertainty in one or more of model structure, model inputs and model parameters. We discuss the differences, and show how mean squared error of prediction can be estimated in both cases. The results can be used to put uncertainty estimates into a more general framework and to relate different uncertainty estimates to one another and to overall prediction uncertainty. This should lead to a better understanding of crop model prediction uncertainty and the underlying causes of that uncertainty. This study was published as (Wallach et al. 2016) |
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MA @ office @ |
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2954 |
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Salo, T.J.; Palosuo, T.; Kersebaum, K.C.; Nendel, C.; Angulo, C.; Ewert, F.; Bindi, M.; Calanca, P.; Klein, T.; Moriondo, M.; Ferrise, R.; Olesen, J.E.; Patil, R.H.; Ruget, F.; Takáč, J.; Hlavinka, P.; Trnka, M.; Rötter, R.P. |
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Title |
Comparing the performance of 11 crop simulation models in predicting yield response to nitrogen fertilization |
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Journal Article |
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Year |
2016 |
Publication |
Journal of Agricultural Science |
Abbreviated Journal |
J. Agric. Sci. |
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Volume |
154 |
Issue |
7 |
Pages |
1218-1240 |
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Keywords |
northern growing conditions; climate-change impacts; spring barley; systems simulation; farming systems; soil properties; winter-wheat; dynamics; growth; management |
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Eleven widely used crop simulation models (APSIM, CERES, CROPSYST, COUP, DAISY, EPIC, FASSET, HERMES, MONICA, STICS and WOFOST) were tested using spring barley (Hordeum vulgare L.) data set under varying nitrogen (N) fertilizer rates from three experimental years in the boreal climate of Jokioinen, Finland. This is the largest standardized crop model inter-comparison under different levels of N supply to date. The models were calibrated using data from 2002 and 2008, of which 2008 included six N rates ranging from 0 to 150 kg N/ha. Calibration data consisted of weather, soil, phenology, leaf area index (LAI) and yield observations. The models were then tested against new data for 2009 and their performance was assessed and compared with both the two calibration years and the test year. For the calibration period, root mean square error between measurements and simulated grain dry matter yields ranged from 170 to 870 kg/ha. During the test year 2009, most models failed to accurately reproduce the observed low yield without N fertilizer as well as the steep yield response to N applications. The multi-model predictions were closer to observations than most single-model predictions, but multi-model mean could not correct systematic errors in model simulations. Variation in soil N mineralization and LAI development due to differences in weather not captured by the models most likely was the main reason for their unsatisfactory performance. This suggests the need for model improvement in soil N mineralization as a function of soil temperature and moisture. Furthermore, specific weather event impacts such as low temperatures after emergence in 2009, tending to enhance tillering, and a high precipitation event just before harvest in 2008, causing possible yield penalties, were not captured by any of the models compared in the current study. |
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0021-8596 1469-5146 |
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CropM, ft_macsur |
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MA @ admin @ |
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4713 |
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