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Iocola, I. (2017). Past experience supports future choices for cropping systems management: the Italian long-term agro-ecosystem experiments (LTAEs) through the IC-FAR network. PhD. Ph.D. thesis, University of Sassari, Sassari.
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Francioni, M. (2017). Soil CO2 emissions and C stock as ecosystem services: a comparison between transhumant and conventional farming systems. PhD. Ph.D. thesis, Università Politecnica delle Marche, .
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Janssen, S. (2017). Open data journal as a publishing and data sharing mechanism (Vol. 10).
Abstract: This deliverable lays out the work as done as part of MACSUR CropM on data publishing, with the focus on improving data sharing and discovery and have shared data curation for future use. As part of the first phase MACSUR, The Open Data Journal for Agricultural Research (www.odjar.org) was started and documented in Deliverable C2.2 as part of Crop M. Odjar.org mainly focuses on long term data archival and citation of data sets, as input and outputs to the modelling work, as part of MACSUR, lead by Wageningen UR This deliverable is a short update on the process of creating such a data journal by demonstrating a set of articles published through the journal, some of which are based on MACSUR results, as well as related networks. The deliverable does not further explain what the journal is, as this is part of the previous deliverable.
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Zhang, S., Tao, F., & Zhang, Z. (2017). Uncertainty from model structure is larger than that from model parameters in simulating rice phenology in China. Europ. J. Agron., 87, 30–39.
Abstract: Rice models have been widely used in simulating and predicting rice phenology in contrasting climate zones, however the uncertainties from model structure (different equations or models) and/or model parameters were rarely investigated. Here, five rice phenological models/modules (Le., CERES-Rice, ORYZA2000, RCM, Beta Model and SIMRIW) were applied to simulate rice phenology at 23 experimental stations from 1992 to 2009 in two major rice cultivation regions of China: the northeastern China and the southwestern China. To investigate the uncertainties from model biophysical parameters, each model was run with randomly perturbed 50 sets of parameters. The results showed that the median of ensemble simulations were better than the simulation by most models. Models couldn’t simulate well in some specific years despite of parameters optimization, suggesting model structure limit model performance in some cases. The models adopting accumulative thermal time function (e.g., CERES-Rice and ORYZA2000) had better performance in the southwestern China, in contrast, those adopting exponential function (e.g., Beta model and RCM model) had better performance in the northeastern China. In northeastern China, the contribution of model structure and model parameters to model total variance was, respectively, about 55.90% and 44.10% in simulating heading date, and about 75.43% and 24.57% in simulating maturity date. In the southwestern China, the contribution of model structure and model parameters to model total variance was, respectively, about 79.97% and 27.03% in simulating heading date, about 92.15% and 7.85% in simulating maturity date. Uncertainty from model structure was the most relevant source. The results highlight that the temperature response functions of rice development rate under extreme climate conditions should be improved based on environment-controlled experimental data.
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Makowski, D. (2017). A simple Bayesian method for adjusting ensemble of crop model outputs to yield observations. Europ. J. Agron., 88, 76–83.
Abstract: Multi-model forecasting has drawn some attention in crop science for evaluating effect of climate change on crop yields. The principle is to run several individual process-based crop models under several climate scenarios in order to generate ensembles of output values. This paper describes a simple Bayesian method – called Bayes linear method- for updating ensemble of crop model outputs using yield observations. The principle is to summarize the ensemble of crop model outputs by its mean and variance, and then to adjust these two quantities to yield observations in order to reduce uncertainty. The adjusted mean and variance combine two sources of information, i.e., the ensemble of crop model outputs and the observations. Interestingly, with this method, observations collected under a given climate scenario can be used to adjust mean and variance of the model ensemble under a different scenario. Another advantage of the proposed method is that it does not rely on a separate calibration of each individual crop model. The uncertainty reduction resulting from the adjustment of an ensemble of crop models to observations was assessed in a numerical application. The implementation of the Bayes linear method systematically reduced uncertainty, but the results showed the effectiveness of this method varied in function of several factors, especially the accuracy of the yield observation, and the covariance between the crop model output and the observation. (C) 2015 Elsevier B.V. All rights reserved.
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