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Sándor, R., Ma, S., Acutis, M., Barcza, Z., Ben Touhami, H., Doro, L., et al. (2015). Uncertainty in simulating biomass yield and carbon–water fluxes from grasslands under climate change. Advances in Animal Biosciences, 6(01), 49–51.
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Martre, P., He, J., Le Gouis, J., & Semenov, M. A. (2015). In silico system analysis of physiological traits determining grain yield and protein concentration for wheat as influenced by climate and crop management. J. Experim. Bot., 66(12), 3581–3598.
Abstract: Genetic improvement of grain yield (GY) and grain protein concentration (GPC) is impeded by large genotype×environment×management interactions and by compensatory effects between traits. Here global uncertainty and sensitivity analyses of the process-based wheat model SiriusQuality2 were conducted with the aim of identifying candidate traits to increase GY and GPC. Three contrasted European sites were selected and simulations were performed using long-term weather data and two nitrogen (N) treatments in order to quantify the effect of parameter uncertainty on GY and GPC under variable environments. The overall influence of all 75 plant parameters of SiriusQuality2 was first analysed using the Morris method. Forty-one influential parameters were identified and their individual (first-order) and total effects on the model outputs were investigated using the extended Fourier amplitude sensitivity test. The overall effect of the parameters was dominated by their interactions with other parameters. Under high N supply, a few influential parameters with respect to GY were identified (e.g. radiation use efficiency, potential duration of grain filling, and phyllochron). However, under low N, >10 parameters showed similar effects on GY and GPC. All parameters had opposite effects on GY and GPC, but leaf and stem N storage capacity appeared as good candidate traits to change the intercept of the negative relationship between GY and GPC. This study provides a system analysis of traits determining GY and GPC under variable environments and delivers valuable information to prioritize model development and experimental work.
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Kraus, D., Weller, S., Klatt, S., Haas, E., Wassmann, R., Kiese, R., et al. (2015). A new LandscapeDNDC biogeochemical module to predict CH4 and N2O emissions from lowland rice and upland cropping systems. Plant Soil, 386(1-2), 125–149.
Abstract: Replacing paddy rice by upland systems such as maize cultivation is an on-going trend in SE Asia caused by increasing water scarcity and higher demand for meat. How such land management changes will feedback on soil C and N cycles and soil greenhouse gas emissions is not well understood at present. A new LandscapeDNDC biogeochemical module was developed that allows the effect of land management changes on soil C and N cycle to be simulated. The new module is applied in combination with further modules simulating microclimate and crop growth and evaluated against observations from field experiments. The model simulations agree well with observed dynamics of CH (4) emissions in paddy rice depending on changes in climatic conditions and agricultural management. Magnitude and peak emission periods of N (2) O from maize cultivation are simulated correctly, though there are still deficits in reproducing day-to-day dynamics. These shortcomings are most likely related to simulated soil hydrology and may only be resolved if LandscapeDNDC is coupled to more complex hydrological models. LandscapeDNDC allows for simulation of changing land management practices in SE Asia. The possibility to couple LandscapeDNDC to more complex hydrological models is a feature needed to better understand related effects on soil-atmosphere-hydrosphere interactions.
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Cammarano, D., Rötter, R. P., Asseng, S., Ewert, F., Wallach, D., Martre, P., et al. (2016). Uncertainty of wheat water use: Simulated patterns and sensitivity to temperature and CO2. Field Crops Research, 198, 80–92.
Abstract: Projected global warming and population growth will reduce future water availability for agriculture. Thus, it is essential to increase the efficiency in using water to ensure crop productivity. Quantifying crop water use (WU; i.e. actual evapotranspiration) is a critical step towards this goal. Here, sixteen wheat simulation models were used to quantify sources of model uncertainty and to estimate the relative changes and variability between models for simulated WU, water use efficiency (WUE, WU per unit of grain dry mass produced), transpiration efficiency (Teff, transpiration per kg of unit of grain yield dry mass produced), grain yield, crop transpiration and soil evaporation at increased temperatures and elevated atmospheric carbon dioxide concentrations ([CO2]). The greatest uncertainty in simulating water use, potential evapotranspiration, crop transpiration and soil evaporation was due to differences in how crop transpiration was modelled and accounted for 50% of the total variability among models. The simulation results for the sensitivity to temperature indicated that crop WU will decline with increasing temperature due to reduced growing seasons. The uncertainties in simulated crop WU, and in particularly due to uncertainties in simulating crop transpiration, were greater under conditions of increased temperatures and with high temperatures in combination with elevated atmospheric [CO2] concentrations. Hence the simulation of crop WU, and in particularly crop transpiration under higher temperature, needs to be improved and evaluated with field measurements before models can be used to simulate climate change impacts on future crop water demand.
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Stefańczyk, E., Sobkowiak, S., Brylińska, M., & Śliwka, J. (2016). Diversity of Fusarium spp. associated with dry rot of potato tubers in Poland. Eur. J. Plant Pathol., .
Abstract: Fusarium spp. belong to the division Ascomycota and cause important plant diseases; these fungi may contaminate food products with mycotoxins, endangering human and animal health. Several Fusarium spp. have been associated with potato dry rot. The most frequent and devastating of these species are F. sambucinum, F. solani and F. oxysporum, depending on the geographic location and the season. Samples of potato tubers with dry rot symptoms were collected, and their putative fungal isolates were identified as Fusarium species using partial nucleotide sequences of the internal transcribed spacer, translation elongation factor 1-α and β-tubulin genes. Among 149 isolates, 12 species were identified. F. oxysporum was the most frequent (45 % of the isolates), followed by F. avenaceum (12.1 %), F. solani (10.7 %) and F. sambucinum (7.4 %). Phylogenetic analyses confirmed the species identifications and revealed a high diversity of F. solani and a low diversity of F. oxysporum. Potential producers of zearalenone and trichothecenes were identified within the obtained isolates using PCR markers. Isolates that were pathogenic to potatoes in laboratory tests were found in four species: F. sambucinum, F. avenaceum, F. culmorum, and F. graminearum. The effects of increased temperature and mixed inoculum on the pathogenicities of chosen species were evaluated. This study adds 434 potato-derived Fusarium sequences to the NCBI GenBank database and demonstrates that the list of Fusarium species and mycotoxins present in potato tubers may be richer than previously believed, regardless of whether these species cause dry rot or live as saprophytes.
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